NEURON and Python

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Lightweight HI source finding for next generation radio surveys

Jean-Paul Richard Kneib, Frédéric Courbin, Emma Elizabeth Tolley, Aymeric Alexandre Galan, Austin Chandler Peel, Mark Thomas Sargent

Future deep HI surveys will be essential for understanding the nature of galaxies and the content of the Universe. However, the large volume of these data will require distributed and automated processing techniques. We introduce LiSA, a set of python modu ...

ELSEVIER2022

HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data

Eilif Benjamin Muller, Armando Romani, Werner Alfons Hilda Van Geit, Szabolcs Kali, Carmen Alina Lupascu, Rosanna Migliore, Luca Leonardo Bologna, Sàra Sàray, Shailesh Appukuttan

Anatomically and biophysically detailed data-driven neuronal models have become widely used tools for understanding and predicting the behavior and function of neurons. Due to the increasing availability of experimental data from anatomical and electrophys ...

2021

Spike frequency adaptation supports network computations on temporally dispersed information

Anand Subramoney

For solving tasks such as recognizing a song, answering a question, or inverting a sequence of symbols, cortical microcircuits need to integrate and manipulate information that was dispersed over time during the preceding seconds. Creating biologically rea ...

2021

When shared concept cells support associations: Theory of overlapping memory engrams

Wulfram Gerstner, Emanuela De Falco, Tilo Schwalger, Chiara Gastaldi

Assemblies of neurons, called concepts cells, encode acquired concepts in human Medial Temporal Lobe. Those concept cells that are shared between two assemblies have been hypothesized to encode associations between concepts. Here we test this hypothesis in ...

2021

Enclosure: Language-Based Restriction of Untrusted Libraries

James Richard Larus, Mathias Josef Payer, Edouard Bugnion, Evangelos Marios Kogias, Adrien Ghosn

Programming languages and systems have failed to address the security implications of the increasingly frequent use of public libraries to construct modern software. Most languages provide tools and online repositories to publish, import, and use libraries ...

ACM2021

A modeling framework to understand and optimize ultrasound neuromodulation

Théo Lemaire

Over the last decade, Low Intensity Focused Ultrasound Stimulation (LIFUS) has emerged as an attractive technology to modulate the activity of deep neural targets without invasive procedures. However, the underlying mechanisms by which ultrasonic waves can ...

EPFL2021

A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience

Daniel Keller, Andrii Stepaniuk

Neuroscience incorporates knowledge from a range of scales, from single molecules to brain wide neural networks. Modeling is a valuable tool in understanding processes at a single scale or the interactions between two adjacent scales and researchers use a ...

HUMANA PRESS INC2022

The Role of Hub Neurons in Modulating Cortical Dynamics

Henry Markram, Felix Schürmann, Idan Segev, Oren Amsalem, Eyal Gal, Michael London

Many neurodegenerative diseases are associated with the death of specific neuron types in particular brain regions. What makes the death of specific neuron types particularly harmful for the integrity and dynamics of the respective network is not well unde ...

2021

One-minute average horizontal wind velocity data (which has been corrected for air-flow distortion) from the Antarctic Circumnavigation Expedition (ACE) 2016/2017 legs 0 to 4

Julia Schmale, Jenny Thomas, Sebastian Johannes Heinz-Josef Landwehr

Dataset abstract One-minute average horizontal wind velocity data from the Antarctic Circumnavigation Expedition (ACE) 2016/2017 legs 0 to 4. The data has been filtered for spurious observations and the true wind correction has been redone ...

2020

One-minute average horizontal wind velocity data (not corrected for air-flow distortion) from the Antarctic Circumnavigation Expedition (ACE) 2016/2017 legs 0 to 4

Julia Schmale, Jenny Thomas, Sebastian Johannes Heinz-Josef Landwehr

Dataset abstract This dataset contains the one-minute average horizontal wind velocity data from the Antarctic Circumnavigation Expedition (ACE) 2016/2017 legs 0 to 4. The data has been filtered for spurious observations and the true wind ...

2020

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