String-searching algorithm | EPFL Graph Search

In computer science, string-searching algorithms, sometimes called string-matching algorithms, are an important class of string algorithms that try to find a place where one or several strings (also called patterns) are found within a larger string or text. A basic example of string searching is when the pattern and the searched text are arrays of elements of an alphabet (finite set) Σ. Σ may be a human language alphabet, for example, the letters A through Z and other applications may use a binary alphabet (Σ = {0,1}) or a DNA alphabet (Σ = {A,C,G,T}) in bioinformatics. In practice, the method of feasible string-search algorithm may be affected by the string encoding. In particular, if a variable-width encoding is in use, then it may be slower to find the Nth character, perhaps requiring time proportional to N. This may significantly slow some search algorithms. One of many possible solutions is to search for the sequence of code units instead, but doing so may produce false matches unless the encoding is specifically designed to avoid it. The most basic case of string searching involves one (often very long) string, sometimes called the haystack, and one (often very short) string, sometimes called the needle. The goal is to find one or more occurrences of the needle within the haystack. For example, one might search for to within: Some books are to be tasted, others to be swallowed, and some few to be chewed and digested. One might request the first occurrence of "to", which is the fourth word; or all occurrences, of which there are 3; or the last, which is the fifth word from the end. Very commonly, however, various constraints are added. For example, one might want to match the "needle" only where it consists of one (or more) complete words—perhaps defined as not having other letters immediately adjacent on either side. In that case a search for "hew" or "low" should fail for the example sentence above, even though those literal strings do occur. Another common example involves "normalization".

Sketches, metrics and fast algorithms

Navid Nouri

As it has become easier and cheaper to collect big datasets in the last few decades, designing efficient and low-cost algorithms for these datasets has attracted unprecedented attention. However, in most applications, even storing datasets as acquired has become extremely costly and inefficient, which motivates the study of sublinear algorithms. This thesis focuses on studying two fundamental graph problems in the sublinear regime. Furthermore, it presents a fast kernel density estimation algorithm and data structure. The first part of this thesis focuses on graph spectral sparsification in dynamic streams. Our algorithm achieves almost optimal runtime and space simultaneously in a single pass. Our method is based on a novel bucketing scheme that enables us to recover high effective resistance edges faster. This contribution presents a novel approach to the effective resistance embedding of the graph, using locality-sensitive hash functions, with possible further future applications.The second part of this thesis presents spanner construction results in the dynamic streams and the simultaneous communication models. First, we show how one can construct a

\tilde{O}(n^{2/3})

-spanner using the above-mentioned almost-optimal single-pass spectral sparsifier, resulting in the first single-pass algorithm for non-trivial spanner construction in the literature. Then, we generalize this result to constructing

\tilde{O}(n^{2/3(1-\alpha)})

-spanners using

\tilde{O}(n^{1+\alpha})

space for any

\alpha \in [0,1]

, providing a smooth trade-off between distortion and memory complexity. Moreover, we study the simultaneous communication model and propose a novel protocol with low per player information. Also, we show how one can leverage more rounds of communication in this setting to achieve better distortion guarantees. Finally, in the third part of this thesis, we study the kernel density estimation problem. In this problem, given a kernel function, an input dataset imposes a kernel density on the space. The goal is to design fast and memory-efficient data structures that can output approximations to the kernel density at queried points. This thesis presents a data structure based on the classical near neighbor search and locality-sensitive hashing techniques that improves or matches the query time and space complexity for radial kernels considered in the literature. The approach is based on an implementation of (approximate) importance sampling for each distance range and then using near neighbor search algorithms to recover points from these distance ranges. Later, we show how to improve the runtime, using recent advances in the data-dependent near neighbor search data structures, for a class of radial kernels that includes the Gaussian kernel.

EPFL2022

Sketches, metrics and fast algorithms

Navid Nouri

\tilde{O}(n^{2/3})

\tilde{O}(n^{2/3(1-\alpha)})

-spanners using

\tilde{O}(n^{1+\alpha})

space for any

\alpha \in [0,1]

EPFL2022