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Concept
Interatomic potential
Summary
Interatomic potentials are mathematical functions to calculate the potential energy of a system of atoms with given positions in space. Interatomic potentials are widely used as the physical basis of molecular mechanics and molecular dynamics simulations in computational chemistry, computational physics and computational materials science to explain and predict materials properties. Examples of quantitative properties and qualitative phenomena that are explored with interatomic potentials include lattice parameters, surface energies, interfacial energies, adsorption, cohesion, thermal expansion, and elastic and plastic material behavior, as well as chemical reactions.
Interatomic potentials can be written as a series expansion of
functional terms that depend on the position of one, two, three, etc.
atoms at a time. Then the total potential of the system can
be written as
Here is the one-body term, the two-body term, the
three body term, the number of atoms in the system,
the position of atom , etc. , and are indices
that loop over atom positions.
Note that in case the pair potential is given per atom pair, in the two-body
term the potential should be multiplied by 1/2 as otherwise each bond is counted
twice, and similarly the three-body term by 1/6. Alternatively,
the summation of the pair term can be restricted to cases
and similarly for the three-body term , if
the potential form is such that it is symmetric with respect to exchange
of the and indices (this may not be the case for potentials
for multielemental systems).
The one-body term is only meaningful if the atoms are in an external
field (e.g. an electric field). In the absence of external fields,
the potential should not depend on the absolute position of
atoms, but only on the relative positions. This means
that the functional form can be rewritten as a function
of interatomic distances
and angles between the bonds
(vectors to neighbours) .
Official source
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Threshold displacement energy
In materials science, the threshold displacement energy (T_d) is the minimum kinetic energy that an atom in a solid needs to be permanently displaced from its site in the lattice to a defect position. It is also known as "displacement threshold energy" or just "displacement energy". In a crystal, a separate threshold displacement energy exists for each crystallographic direction. Then one should distinguish between the minimum (T_d,min) and average (T_d,ave) over all lattice directions' threshold displacement energies.
Force field (chemistry)
In the context of chemistry and molecular modelling, a force field is a computational method that is used to estimate the forces between atoms within molecules and also between molecules. More precisely, the force field refers to the functional form and parameter sets used to calculate the potential energy of a system of atoms or coarse-grained particles in molecular mechanics, molecular dynamics, or Monte Carlo simulations. The parameters for a chosen energy function may be derived from experiments in physics and chemistry, calculations in quantum mechanics, or both.
Molecular dynamics
Molecular dynamics (MD) is a computer simulation method for analyzing the physical movements of atoms and molecules. The atoms and molecules are allowed to interact for a fixed period of time, giving a view of the dynamic "evolution" of the system. In the most common version, the trajectories of atoms and molecules are determined by numerically solving Newton's equations of motion for a system of interacting particles, where forces between the particles and their potential energies are often calculated using interatomic potentials or molecular mechanical force fields.