Publications related to Marker-assisted selection

Mutation-based greybox fuzzing-unquestionably the most widely-used fuzzing technique-relies on a set of non-crashing seed inputs (a corpus) to bootstrap the bug-finding process. When evaluating a fuzzer, common approaches for constructing this corpus inclu ...

ASSOC COMPUTING MACHINERY2021

Revealing Antibiotic Tolerance of the Mycobacterium smegmatis Xanthine/Uracil Permease Mutant Using Microfluidics and Single-Cell Analysis

John McKinney, Neeraj Dhar, Meltem Elitas

To reveal rare phenotypes in bacterial populations, conventional microbiology tools should be advanced to generate rapid, quantitative, accurate, and high-throughput data. The main drawbacks of widely used traditional methods for antibiotic studies include ...

MDPI2021

Approximate Steepest Coordinate Descent

Martin Jaggi, Sebastian Urban Stich, Anant Raj

We propose a new selection rule for the coordinate selection in coordinate descent methods for huge-scale optimization. The efficiency of this novel scheme is provably better than the efficiency of uniformly random selection, and can reach the efficiency o ...

PMLR2017

Spatial Areas of Genotype Probability of Cattle Genomic Variants Involved in the Resistance to East Coast Fever: A Tool to Predict Future Disease-Vulnerable Geographical Regions

Stéphane Joost, Estelle Rochat, Elia Vajana

East Coast Fever (ECF) is a livestock disease caused by Theileria parva, a protozoan transmitted by the vector tick Rhipicephalus appendiculatus. This disease causes high mortality in cattle populations of Central and Eastern Africa, especially in exotic b ...

2016

Neutral and Adaptive Drivers of Microgeographic Genetic Divergence within Continuous Populations: The Case of the Neotropical Tree Eperua falcata (Aubl.)

Matthieu Foll

Background In wild plant populations, genetic divergence within continuous stands is common, sometimes at very short geographical scales. While restrictions to gene flow combined with local inbreeding and genetic drift may cause neutral differentiation amo ...

Public Library of Science2015

Extending the Schizosaccharomyces pombe Molecular Genetic Toolbox

Viesturs Simanis, Andrea Krapp

Targeted alteration of the genome lies at the heart of the exploitation of S. pombe as a model system. The rate of analysis is often determined by the efficiency with which a target locus can be manipulated. For most loci this is not a problem, however for ...

Public Library of Science2014

An evolutionarily conserved role for the aryl hydrocarbon receptor in the regulation of movement

Johan Auwerx, Bart Deplancke, Laurent Mouchiroud, Pénélope Andreux, Evan Graehl Williams, Michael Vincent Frochaux

The BXD genetic reference population is a recombinant inbred panel descended from crosses between the C57BL/6 (B6) and DBA/2 (D2) strains of mice, which segregate for about 5 million sequence variants. Recently, some of these variants have been established ...

Public Library of Science2014

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

Jian Wang, Jun Wang, Lei Huang, Xun Xu, Jeffrey David Jensen, Xin Liu, Wen Wang, Chang Yu

Rice is a staple crop that has undergone substantial phenotypic and physiological changes during domestication. Here we resequenced the genomes of 40 cultivated accessions selected from the major groups of rice and 10 accessions of their wild progenitors ( ...

Nature Publishing Group2012

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Marker-assisted selection

Lignin Hydrogenolysis: Phenolic Monomers from Lignin and Associated Phenolates across Plant Clades

Seed Selection for Successful Fuzzing

Revealing Antibiotic Tolerance of the Mycobacterium smegmatis Xanthine/Uracil Permease Mutant Using Microfluidics and Single-Cell Analysis

Evolution of longevity improves immunity in Drosophila

Approximate Steepest Coordinate Descent

Spatial Areas of Genotype Probability of Cattle Genomic Variants Involved in the Resistance to East Coast Fever: A Tool to Predict Future Disease-Vulnerable Geographical Regions

Neutral and Adaptive Drivers of Microgeographic Genetic Divergence within Continuous Populations: The Case of the Neotropical Tree Eperua falcata (Aubl.)

Extending the Schizosaccharomyces pombe Molecular Genetic Toolbox

An evolutionarily conserved role for the aryl hydrocarbon receptor in the regulation of movement

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

Graph Chatbot

Chat with Graph Search

Lignin Hydrogenolysis: Phenolic Monomers from Lignin and Associated Phenolates across Plant Clades

Revealing Antibiotic Tolerance of the Mycobacterium smegmatis Xanthine/Uracil Permease Mutant Using Microfluidics and Single-Cell Analysis

Evolution of longevity improves immunity in Drosophila

Seed Selection for Successful Fuzzing

Approximate Steepest Coordinate Descent

Spatial Areas of Genotype Probability of Cattle Genomic Variants Involved in the Resistance to East Coast Fever: A Tool to Predict Future Disease-Vulnerable Geographical Regions

Neutral and Adaptive Drivers of Microgeographic Genetic Divergence within Continuous Populations: The Case of the Neotropical Tree Eperua falcata (Aubl.)

Extending the Schizosaccharomyces pombe Molecular Genetic Toolbox

An evolutionarily conserved role for the aryl hydrocarbon receptor in the regulation of movement

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes