Organic compound

Summary

In chemistry, many authors consider an organic compound to be any chemical compound that contains carbon-hydrogen or carbon-carbon bonds, however, some authors consider an organic compound to be any chemical compound that contains carbon. The definition of "organic" versus "inorganic" varies from author to author, and is a topic of debate. For example, methane () is considered organic, but whether some other carbon-containing compounds are organic or inorganic varies from author to author, for example halides of carbon without carbon-hydrogen and carbon-carbon bonds (e.g. carbon tetrachloride ), and certain compounds of carbon with nitrogen and oxygen (e.g. cyanide ion , hydrogen cyanide HCN, chloroformic acid and carbonate ion ). Due to carbon's ability to catenate (form chains with other carbon atoms), millions of organic compounds are known. The study of the properties, reactions, and syntheses of organic compounds comprise the discipline known as organic chemistry. For historic

Official source

https://en.wikipedia.org/wiki/Organic_compound

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The student will learn the important processes that control the transport and transformation of organic chemicals in the environment, as well as the formulation and solution of quantitative models to describe these processes.

This course provides students with an overview over the basics of environmental chemistry. This includes the chemistry of natural systems, as well as the fate of anthropogenic chemicals in natural systems. It enables students to apply general chemical concepts to natural systems.

Le cours comporte deux parties. Les bases de la thermodynamique des équilibres et de la cinétique des réactions sont introduites dans l'une d'elles. Les premières notions de chimie quantique sur les électrons et les liaisons chimiques, exemplifiées en chimie organique, sont présentées dans l'autre.

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Electron Beam Induced Copper Deposition from Carboxylate Precursors and the Study of Underlying Growth Mechanisms

Luisa Berger

The fabrication of defined and high-quality metal nanostructures is an ongoing topic of research. Direct-write deposition of copper nanostructures is of great value for many fields of research and industrial applications. Focused electron beam induced deposition (FEBID) is an additive fabrication technique with extremely high resolution and versatility. Physisorbed, gaseous precursor molecules are locally dissociated by a finely focused electron beam resulting in volatile fragments which desorb and non-volatile fragments forming the deposit. When applying suitable deposition parameters, these deposits can be as small as the beam diameter and have ideally little to no contamination. For electron beam induced metal deposition, metal-organic compounds are chosen as precursors. However, organic ligand material is often co-deposited, which is detrimental to the depositâs properties. This work addresses the study of the perfluorinated copper carboxylate [Cu2(ÎŒ-O2CC2F5)4] (Cu2(pfp)4) and its aminated derivatives Cu2(EtNH2)2(pfp)4 and Cu2(tBuNH2)2(pfp)4 as viable FEBID precursors. 25 at.% of copper was achieved with the amine free compound, and 15 at.% with each of the two aminated complexes. Based on the chemical analysis of the deposits, electron-induced dissociation paths were proposed for the adsorbed species, demonstrating the influence of the ligand chemistry and fragmentation on the deposit composition. In parallel, the perfluorinated silver carboxylate Ag2(pfp)2 was reported and compared directly to its copper equivalent. The silver complex yielded up to 74 at.% metal content and exhibited strong susceptibility to varying electron beam densities throughout the deposit. Cu2(pfp)4 did not manifest the same electron sensitivity. Theoretical models, combining analytical solutions with Monte Carlo simulations of primary and backscattered electrons were successfully fitted to the cross sections of deposits from both carboxylates, determining the growth regimes within a single spot deposit. Additionally, two previously reported Î²-diketonates, Cu(hfac)2 and Cu(tbaoac)2, were directly compared to the other Cu(II) precursors with the aim to determine any dependence of the ligand size, electron density or dwell time on the deposit purity. The investigations concluded that the metal content rather depends on the chemistry of the metal-ligand bond than on the ligand size. This applies to both, the variation of ligands and the variation of the metal center. vii Furthermore, two copper complexes, Cu(hfac)2 and Cu2(pfp)4, were investigated in situ with a dedicated, custom-made setup. The âeQCMâ combines a low energy electron source (10- 100 eV) with a quartz crystal microbalance and serves to study fundamental processes occurring during FEBI deposition. First results yielded the total dissociation cross section for each precursor at varying electron energies. Finally, alternative approaches for the electron induced copper deposition from Cu2(pfp)4 were investigated. A two-step post-purification recipe of as-deposited material was reported to yield pure copper crystals (> 97 at.%). Additionally, direct electron beam lithography in a layer of condensed precursor was explored. This room temperature deposition approach yielded in lower metal contents but could potentially produce high resolution deposition.

EPFL2020

The structure of a biological system defines its function. Therefore, nature has developed sophisticated systems that catalyze chemical reactions that are vital for life on earth. For instance, the photosynthesis is a biological process that is partially regulated by the metallo-enzyme RuBisCO (Ribulose-1,5-bisphosphate carboxylase/oxygenase), whose function is to catalyze the capture and transfer of CO2 into organic molecules. This carboxylation reaction occurs at the active site, where a magnesium ion (Mg2+) is bound to organic molecules with carboxylate (COO-) and amine (NH2) functional groups. In the last decades, supramolecular chemistry has proven to be a valid approach to replicate the structural characteristics of these natural metal-organic systems. Metal atoms and organic molecules are used as building blocks to form two-dimensional (2D) metal-organic networks (MONs) on metal surfaces, through a self-assembly process that occurs spontaneously. In these systems the molecules bind to the metal centers and control their oxidation states that, as found in metallo-enzymes, is crucial to perform a catalytic task. Therefore, these supramolecular assemblies show promising features to be explored for heterogeneous catalysis. The main objective of this thesis is to reverse the structure-function equation, that is: instead of finding specific functions of well-known 2D structures for future applications, 2D structures are designed to reproduce the specific functions of well-known bio-systems. Thus, inspired in the structure of the active site of RuBisCO, 2D Mg-based supramolecular assemblies are rationally designed on Cu(100) or Mg(0001) surfaces at room temperature (RT) as a platform for CO2 adsorption. This work is the first study of self-assembly of alkaline earth metal atoms (Mg) with organic molecules ((1,4-benzenedicarboxylic acid (TPA) and 2,4,6-tris(4-aminophenyl)-1,3,5-triazine (TAPT)) on metal surfaces. The first part of this thesis investigates the self-assembly of TAPT molecules. Scanning Tunneling Microscopy (STM) and High Resolution X-ray Photoemission Spectroscopy (HR-XPS) demonstrate that the molecules typically semi-deprotonate to form MONs with the adatoms from the host substrates. The exposure of these structures to CO2 results in the carboxylation of the amino groups. The second part proves that the COOH moieties of TPA molecules fully-deprotonate to form homo-molecular structures. The incorporation of Mg adatoms result in ionic MONs, which reproduce the carboxylate environment of the active site of RuBiSCO. STM, XPS and Density Functional Theory (DFT) analyze the structural changes, the chemical reactions and charge transfer during either the CO2 or O2 adsorption on the Mg2+ centers. The last part focusses on the co-deposition of both molecules to form 2D metallic-hetero-molecular networks with Mg2+ centers. The role of the Mg2+ centers as active sites for molecular adsorption and model systems for gas storage is studied. STM reveals that CO2 partially modifies the network towards a configuration that resembles the active site of RuBisCO. The formation of 3D structures to enhance CO2 adsorption is also evaluated.

EPFL2018

Theoretical investigation of organic compounds for dye-sensitized solar cells: the performance of post Hartree-Fock methods, density functional theory and solvation with the polarizable continuum model

Loïc Roch

2012

EPFL2018

Electron Beam Induced Copper Deposition from Carboxylate Precursors and the Study of Underlying Growth Mechanisms

Luisa Berger

EPFL2020