Agricultural pollution refers to biotic and abiotic byproducts of farming practices that result in contamination or degradation of the environment and surrounding ecosystems, and/or cause injury to humans and their economic interests. The pollution may come from a variety of sources, ranging from point source water pollution (from a single discharge point) to more diffuse, landscape-level causes, also known as non-point source pollution and air pollution. Once in the environment these pollutants can have both direct effects in surrounding ecosystems, i.e. killing local wildlife or contaminating drinking water, and downstream effects such as dead zones caused by agricultural runoff is concentrated in large water bodies. Management practices, or ignorance of them, play a crucial role in the amount and impact of these pollutants. Management techniques range from animal management and housing to the spread of pesticides and fertilizers in global agricultural practices, which can have major environmental impacts. Bad management practices include poorly managed animal feeding operations, overgrazing, plowing, fertilizer, and improper, excessive, or badly timed use of pesticides. Pollutants from agriculture greatly affect water quality and can be found in lakes, rivers, wetlands, estuaries, and groundwater. Pollutants from farming include sediments, nutrients, pathogens, pesticides, metals, and salts. Animal agriculture has an outsized impact on pollutants that enter the environment. Bacteria and pathogens in manure can make their way into streams and groundwater if grazing, storing manure in lagoons and applying manure to fields is not properly managed. Air pollution caused by agriculture through land use changes and animal agriculture practices have an outsized impact on climate change, and addressing these concerns was a central part of the IPCC Special Report on Climate Change and Land. Mitigation of agricultural pollution is a key component in the development of a sustainable food system.

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Anaerobic lagoon
An anaerobic lagoon or manure lagoon is a man-made outdoor earthen basin filled with animal waste that undergoes anaerobic respiration as part of a system designed to manage and treat refuse created by concentrated animal feeding operations (CAFOs). Anaerobic lagoons are created from a manure slurry, which is washed out from underneath the animal pens and then piped into the lagoon. Sometimes the slurry is placed in an intermediate holding tank under or next to the barns before it is deposited in a lagoon.
Nutrient pollution
Nutrient pollution, a form of water pollution, refers to contamination by excessive inputs of nutrients. It is a primary cause of eutrophication of surface waters (lakes, rivers and coastal waters), in which excess nutrients, usually nitrogen or phosphorus, stimulate algal growth. Sources of nutrient pollution include surface runoff from farm fields and pastures, discharges from septic tanks and feedlots, and emissions from combustion. Raw sewage is a large contributor to cultural eutrophication since sewage is high in nutrients.
Point source pollution
A point source of pollution is a single identifiable source of air, water, thermal, noise or light pollution. A point source has negligible extent, distinguishing it from other pollution source geometries (such as nonpoint source or area source). The sources are called point sources because in mathematical modeling, they can be approximated as a mathematical point to simplify analysis.
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