Publications related to Protein subunit

First paleoproteome study of fossil fish otoliths and the pristine preservation of the biomineral crystal host

Anders Meibom, Jaroslaw Hubert Stolarski, Jinming Guo

Otoliths are calcium carbonate components of the stato-acoustical organ responsible for hearing and maintenance of the body balance in teleost fish. During their formation, control over, e.g., morphology and carbonate polymorph is influenced by complex ins ...

NATURE PORTFOLIO2023

Structure of a membrane-bound menaquinol:organohalide oxidoreductase

Christof Holliger, Henning Paul-Julius Stahlberg, Julien Maillard, Dongchun Ni, Lorenzo Cimmino

Organohalide-respiring bacteria are key organisms for the bioremediation of soils and aquifers contaminated with halogenated organic compounds. The major players in this process are respiratory reductive dehalogenases, corrinoid enzymes that use organohali ...

2023

New protein–protein interactions designed by a computer

Pablo Gainza Cirauqui, Anthony Marchand

Creating protein interactions through computational design is a key challenge in the fields of both basic and translational biology. An approach that uses the machine-learned fingerprints of protein-surface features was used to produce synthetic proteins t ...

2023

Biological nanopores for single-molecule sensing

Matteo Dal Peraro, Chan Cao, Simon Finn Mayer

Evolution has found countless ways to transport material across cells and cellular compartments separated by membranes. Protein assemblies are the cornerstone for the formation of channels and pores that enable this regulated passage of molecules in and ou ...

2022

Extracting phylogenetic dimensions of coevolution reveals hidden functional signals

Anne-Florence Raphaëlle Bitbol

Despite the structural and functional information contained in the statistical coupling between pairs of residues in a protein, coevolution associated with function is often obscured by artifactual signals such as genetic drift, which shapes a protein's ph ...

NATURE PORTFOLIO2022

Conditional essentiality of a complex I-like enzyme in strict anaerobes: the case of Desulfitobacterium

Christof Holliger, Julien Maillard, Romain Hamelin, Mathilde Stéphanie Willemin, Florence Armand

Respiratory complex I is a well-known player in aerobic respiration; it couples the transfer of two electrons from NADH to ubiquinone alongside with proton pumping. Bacterial complex I is usually composed of fourteen subunits forming three different module ...

2021

Complex I-like enzymes in organohalide-respiring bacteria

Christof Holliger, Julien Maillard, Romain Hamelin, Mathilde Stéphanie Willemin, Florence Armand

Complex I (NADH:ubiquinone oxidoreductase, NUO) and complex I-like enzymes have been detected in several organohalide-respiring bacteria at genomic and proteomic levels. The question of the involvement of these enzymes in organohalide respiration remains t ...

2021

High-resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica

Henning Paul-Julius Stahlberg, Jasenko Zivanov

Urease converts urea into ammonia and carbon dioxide and makes urea available as a nitrogen source for all forms of life except animals. In human bacterial pathogens, ureases also aid in the invasion of acidic environments such as the stomach by raising th ...

2020

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Protein subunit

Engineering novel protein interactions with therapeutic potential using deep learning-guided surface design

First paleoproteome study of fossil fish otoliths and the pristine preservation of the biomineral crystal host

Structure of a membrane-bound menaquinol:organohalide oxidoreductase

New protein–protein interactions designed by a computer

Biological nanopores for single-molecule sensing

Extracting phylogenetic dimensions of coevolution reveals hidden functional signals

Computational design of highly signaling active membrane receptors through de novo solvent-mediated allosteric networks

Conditional essentiality of a complex I-like enzyme in strict anaerobes: the case of Desulfitobacterium

Complex I-like enzymes in organohalide-respiring bacteria

High-resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica

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Chat with Graph Search

Engineering novel protein interactions with therapeutic potential using deep learning-guided surface design

Structure of a membrane-bound menaquinol:organohalide oxidoreductase

Extracting phylogenetic dimensions of coevolution reveals hidden functional signals

New protein–protein interactions designed by a computer

First paleoproteome study of fossil fish otoliths and the pristine preservation of the biomineral crystal host

High-resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica

Computational design of highly signaling active membrane receptors through de novo solvent-mediated allosteric networks

Complex I-like enzymes in organohalide-respiring bacteria

Biological nanopores for single-molecule sensing

Conditional essentiality of a complex I-like enzyme in strict anaerobes: the case of Desulfitobacterium