Ecological niche | EPFL Graph Search

In ecology, a niche is the match of a species to a specific environmental condition. It describes how an organism or population responds to the distribution of resources and competitors (for example, by growing when resources are abundant, and when predators, parasites and pathogens are scarce) and how it in turn alters those same factors (for example, limiting access to resources by other organisms, acting as a food source for predators and a consumer of prey). "The type and number of variables comprising the dimensions of an environmental niche vary from one species to another [and] the relative importance of particular environmental variables for a species may vary according to the geographic and biotic contexts". A Grinnellian niche is determined by the habitat in which a species lives and its accompanying behavioral adaptations. An Eltonian niche emphasizes that a species not only grows in and responds to an environment, it may also change the environment and its behavior as it

Fonctionnement hydrique de différents types de placages sableux dans le sahel burkinabè

Dial Niang

The study was performed in the Sahelian part of Burkina Faso. The country is subject to difficult climatic conditions, a strong demographic growth and a continuous decrease in soil fertility. The resulting degradation affects the processes which govern ecological systems and leads, on the long run, to a modification of the ecosystems. This is particularly the case of the eolian formations, the only ecological units susceptible of being useful in the area, since they present good infiltration capacity and support the main part of the vegetation. Field measurements (rainfall, runoff, saturated hydraulic conductivity, bulk density, hydraulic conductivity function, soil water content and pressure head) have been done to asses the impacts of the environmental degradation on the hydrodynamic behavior of these formations. Within this context, an experimental device made of seven measurement sites has been installed in three contrasting zones. The results show significant differences in the hydrodynamic behavior of the soils, according to their surface properties. On one hand, the sites located on an erosion crust as well as on a drying crust in transition towards an erosion crust, are characterized by a low infiltration capacity which favors runoff. The quantity of infiltrated water is very low when compared to total precipitation. Water is stored near the soil surface (in the first 30 cm) favoring evaporation in the days following rainfall events. Thus, little water is available for plants. The resulting water stress causes a weak density, or even complete absence of plants which have difficulties to colonize such surfaces. Surface runoff is favored with runoff coefficients ranging from 50 to 80 %. On the other hand, the sites situated on drying crusts are characterized by good hydraulic conductivity and infiltration capacity. The storage of water in the root zone is more important. Water flows deeper into the soil and, occasionally, drains at the reference depth of 50 cm. The runoff coefficients were found to be lower than in the other sites (30 to 40 %). This differentiated behavior is one of the main factors affecting the formation of different landscapes in the area through the existence of a relationship between soil surface properties, the type of landscape and the ratio runoff/infiltration. The sites located on an erosion crust and those in transition towards an erosion crust behave like impluviums, while those situated on drying crusts are more favorable to infiltration. Observation of the evolution of the hydraulic properties of the soil surface shows a progressive alteration that frequently leads to strongly degraded mediums unfavorable to plants. Control and rehabilitation methods considered in the study, namely "restoration" and "mise en défens" have only partial and time-limited effects; they do not make it possible to stop durably degradation or to favor rehabilitation. Among the other measures assessed on the INERA plots, only the restitution to the soil of the beforehand mown plants causes an improvement of the soil surface properties; the restitution causes the formation of an important macroporal system favoring water infiltration and circulation in the soil. The effects of those different measures occur mainly in the first years after their introduction and concern especially vegetation regeneration, soil protection against degradation factors, improvement of hydrodynamic soil properties, reduction of runoff and erosion. They make it possible to slow down soil degradation, but not to stop it definitively. Within this context, proposals of further studies focussed on other measures to control and rehabilitate degraded areas have been suggested, taking into account the specificity of the sahelian zone, the endogenous knowledge of the agro-pastors, as well as socio-economic and ecological conditions.

EPFL2006

Characterization of bacterial communities in Lake Geneva by comparing genetic and physiological methods

Coralie Chappelier

Over the last century, the level of atmospheric CO2 has increased to the highest concentrations on Earth within the past 800'000 years. Current predictions anticipate that the effects of greenhouse gases will lead to a rise in air temperature ranging between 1.4 and 5.8°C. Oceans and freshwater ecosystems absorb large quantities of CO2, but are sensitive to global climate change that directly influences water temperature and pH. Specifically, phytoplankton accounts for approximately 50% of the total photosynthesis on Earth, and contributes to the mobilization of CO2 through sinking or transferring fixed carbon to deeper water layers and sediments. Bacteria are among the most abundant entities in plankton and play a major role on the biological pump for the cycling of carbon and other elements. In order to understand and anticipate the response of aquatic ecosystems to climate change, we need to characterize how planktonic organisms respond and adapt to environmental change. In this project, we will merge microbial ecology and genomics with the ultimate goals of (i) characterizing current ecological niches of the operational taxonomic units highlighted in bacteria populations of Lake Geneva, (ii) identifying candidate adaptive genes responsible for adaptation of freshwater bacterial communities to contrasting freshwater habitats, (iii) projecting current bacteria distributions as a function of the expected change and (iv) identifying possible alterations in ecosystem functioning and services as a function of climate change. By doing this, we expect to contribute expanding our ability to characterize ecological niches using genetic data and sensitizing society about the importance of protecting freshwater ecosystems.

2020

Regulation of sedimentation rate shapes the evolution of multicellularity in a close unicellular relative of animals

Omaya Pierre Dudin

Significant increases in sedimentation rate accompany the evolution of multicellularity. These increases should lead to rapid changes in ecological distribution, thereby affecting the costs and benefits of multicellularity and its likelihood to evolve. However, how genetic and cellular traits control this process, their likelihood of emergence over evolutionary timescales, and the variation in these traits as multicellularity evolves are still poorly understood. Here, using isolates of the ichthyosporean genus Sphaeroforma-close unicellular relatives of animals with brief transient multicellular life stages-we demonstrate that sedimentation rate is a highly variable and evolvable trait affected by at least 2 distinct physical mechanisms. First, we find extensive (>300x) variation in sedimentation rates for different Sphaeroforma species, mainly driven by size and density during the unicellular-to-multicellular life cycle transition. Second, using experimental evolution with sedimentation rate as a focal trait, we readily obtained, for the first time, fast settling and multicellular Sphaeroforma arctica isolates. Quantitative microscopy showed that increased sedimentation rates most often arose by incomplete cellular separation after cell division, leading to clonal "clumping" multicellular variants with increased size and density. Strikingly, density increases also arose by an acceleration of the nuclear doubling time relative to cell size. Similar size- and density-affecting phenotypes were observed in 4 additional species from the Sphaeroforma genus, suggesting that variation in these traits might be widespread in the marine habitat. By resequencing evolved isolates to high genomic coverage, we identified mutations in regulators of cytokinesis, plasma membrane remodeling, and chromatin condensation that may contribute to both clump formation and the increase in the nuclear number-to-volume ratio. Taken together, this study illustrates how extensive cellular control of density and size drive sedimentation rate variation, likely shaping the onset and further evolution of multicellularity.

PUBLIC LIBRARY SCIENCE2022