Concept

Microbial population biology

Related publications (30)

Optimality principles for the analysis of biological processes across scales: From enzyme kinetics to microbiome dynamics

Microorganisms are essential for life on Earth, performing key roles in numerous biological processes. Their influence extends across a wide spectrum, from human health and ecological balance to advancements in biotechnology and industrial applications. Th ...

EPFL2024

The microbial genomics of glacier-fed streams: adaptations to an extreme ecosystem

Massimo Bourquin

Glacier-fed streams are the cold, ultra-oligotrophic, and unstable streams that are fed by glacial meltwater. Despite these extreme conditions, they harbour a diverse and abundant microbial diversity that develops into biofilms, covering the boulders and s ...

EPFL2024

Reconstruction and analysis of genome-scale metabolic networks in single organisms and microbial communities

Evangelia Vagena

Microorganisms are a key component in the chain of life. They are essential for agriculture, produce a large proportion of oxygen, and play a central role in the cycle of elements. Microorganisms are widely used in the production of food and alcoholic beve ...

EPFL2024

The Effects of Spatial Organization and Fluid Flow on the Social Interactions in Microbial Communities

Jeremy Pak Hei Wong

Bacteria often engage in social interactions with neighbouring bacteria. Ecosystems which are subjected to social interactions have been widely studied in well mixed settings such as test tubes, allowing us to identify the cellular components contributingt ...

EPFL2023

Response of alpine stream biofilms to climate change induced stressors

Tom Ian Battin, Hannes Markus Peter, Grégoire Marie Octave Edouard Michoud, Nicola Deluigi, David Touchette, Martina Gonzalez Mateu, Paraskevi Pramateftaki

Alpine streams are expected to face an intensification of environmental stressors due to climate change. At the vanishing cryosphere interface, alpine streams are particularly susceptible to increasing temperatures and to changing hydrology. As biofilms ar ...

2022

Response of alpine stream biofilms to climate change induced stressors

Tom Ian Battin, Hannes Markus Peter, Grégoire Marie Octave Edouard Michoud, Nicola Deluigi, David Touchette, Martina Gonzalez Mateu, Stylianos Fodelianakis, Paraskevi Pramateftaki

Alpine streams are expected to face an intensification of environmental stressors due to climate change. Being at the interface of the vanishing cryosphere, alpine streams are particularly susceptible to increasing temperatures and to changing hydrology. A ...

2022

Contrasting Microbiome Dynamics of Putative Denitrifying Bacteria in Two Octocoral Species Exposed to Dissolved Organic Carbon (DOC) and Warming

Nils Rädecker, Claudia Isabella Pogoreutz

Mutualistic nutrient cycling in the coral-algae symbiosis depends on limited nitrogen (N) availability for algal symbionts. Denitrifying prokaryotes capable of reducing nitrate or nitrite to dinitrogen could thus support coral holobiont functioning by limi ...

2022

Microbial community assembly in streams draining proglacial floodplains

Tom Ian Battin, Hannes Markus Peter, Susheel Bhanu Busi, Grégoire Marie Octave Edouard Michoud, Leïla Ezzat, Massimo Bourquin, Tyler Joe Kohler, Jade Brandani, Stylianos Fodelianakis, Paraskevi Pramateftaki

As glaciers shrink, new terrain is exposed and drained by proglacial streams along both longitudinal and lateral chronosequences which are fed by various water sources (glacier melt, snowmelt, and groundwater). While benthic microbial biofilms often initia ...

2022

Development of soft microscopic implants and acoustically-powered machines for biomedical applications

Murat Kaynak

The development of miniaturized machines that can actively cross barriers, navigate through heterogeneous materials and access remote sites can revolutionize environmental inspection and targeted therapy. Seminal work demonstrated the feasibility of follow ...

EPFL2021

Active sulfur cycling in the terrestrial deep subsurface

Rizlan Bernier-Latmani, Manon Frutschi, Emma Bell, Chen Qian

The deep terrestrial subsurface remains an environment where there is limited understanding of the extant microbial metabolisms. At Olkiluoto, Finland, a deep geological repository is under construction for the final storage of spent nuclear fuel. It is th ...

2020

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