Concept

Tomographic reconstruction

Related publications (440)

Improving 3D MA-TIRF Reconstruction with Deconvolution and Background Estimation

Emmanuel Emilien Louis Soubies, Sébastien Schaub

Total internal reflection fluorescence microscopy (TIRF) produces 2D images of the fluorescent activity integrated over a very thin layer adjacent to the glass coverslip. By varying the illumination angle (multi-angle TIRF), a stack of 2D images is acquire ...

IEEE2019

Pocket guide to solve inverse problems with GlobalBioIm

Michaël Unser, Daniel Sage, Thanh-An Michel Pham, Laurène Donati, Emmanuel Emilien Louis Soubies, Ferréol Arnaud Marie Soulez, Michael Thompson McCann, Thomas Jean Debarre

GlobalBioIm is an open-source MATLAB (R) library for solving inverse problems. The library capitalizes on the strong commonalities between forward models to standardize the resolution of a wide range of imaging inverse problems. Endowed with an operator-al ...

IOP PUBLISHING LTD2019

SROBB: Targeted Perceptual Loss for Single Image Super-Resolution

Jean-Philippe Thiran, Hazim Kemal Ekenel, Mohammad Saeed Rad

By benefiting from perceptual losses, recent studies have improved significantly the performance of the super-resolution task, where a high-resolution image is resolved from its low-resolution counterpart. Although such objective functions generate near-ph ...

IEEE COMPUTER SOC2019

MATHICSE Technical Report : Function integration, reconstruction and approximation using rank-1 lattices

Fabio Nobile, Giovanni Migliorati

We consider rank-1 lattices for integration and reconstruction of functions with series expansion supported on a finite index set. We explore the connection between the periodic Fourier space and the non-periodic cosine space and Chebyshev space, via tent ...

MATHICSE2019

Model-based super-resolution reconstruction of T-2 maps

Jean-Philippe Thiran, Tobias Kober, Tom Hilbert, Gian Franco Piredda, Reto Meuli, Mohammad Golbabaee, Wajiha Bano

Purpose High-resolution isotropic T-2 mapping of the human brain with multi-echo spin-echo (MESE) acquisitions is challenging. When using a 2D sequence, the resolution is limited by the slice thickness. If used as a 3D acquisition, specific absorption rate ...

WILEY2019

Development and validation of a double focalizing magnetic spectrometer for beta spectrum measurements

Guido Haefeli, François Bochud

In the framework of the EMPIR project MetroBeta, the development and optimization of a double focalizing magnetic spectrometer have been realized in order to measure the beta spectra shape. The acquisition is designed to perform, after focalization by the ...

ELSEVIER2019

Sparse wars: A survey and comparative study of spherical deconvolution algorithms for diffusion MRI

Jean-Philippe Thiran, Erick Jorge Canales Rodriguez, Gabriel Girard, David Paul Roger Romascano, Marco Pizzolato, Jonathan Rafael Patino Lopez, Alessandro Daducci, Muhamed Barakovic, Gaëtan Olivier D Rensonnet

Spherical deconvolution methods are widely used to estimate the brain's white-matter fiber orientations from diffusion MRI data. In this study, eight spherical deconvolution algorithms were implemented and evaluated. These included two model selection tech ...

2019

3D Reconstruction of Optical Diffraction Tomography Based on a Neural Network Model

Morteza Hasani Shoreh

Optical tomography has been widely investigated for biomedical imaging applications. In recent years, it has been combined with digital holography and has been employed to produce high quality images of phase objects such as cells. In this Thesis, we look ...

EPFL2018

Learning-Based Compressive MRI

Volkan Cevher, Jonathan Mark Scarlett, Yen-Huan Li, Baran Gözcü, Rabeeh Karimi Mahabadi

In the area of magnetic resonance imaging (MRI), an extensive range of non-linear reconstruction algorithms have been proposed that can be used with general Fourier subsampling patterns. However, the design of these subsampling patterns has typically been ...

2018

Full-Pulse Tomographic Reconstruction with Deep Neural Networks

Olivier Sauter, Ambrogio Fasoli, Basil Duval, Stefano Coda, Jonathan Graves, Yves Martin, Duccio Testa, Patrick Blanchard, Alessandro Pau, Cristian Sommariva, Henri Weisen, Richard Pitts, Yann Camenen, Jan Horacek, Javier García Hernández, Marco Wischmeier, Nicola Vianello, Mikhail Maslov, Federico Nespoli, Yao Zhou, David Pfefferlé, Davide Galassi, Antonio José Pereira de Figueiredo, Jonathan Marc Philippe Faustin, Liang Yao, Dalziel Joseph Wilson, Hamish William Patten, Samuel Lanthaler, Bernhard Sieglin, Otto Asunta

Plasma tomography consists of reconstructing a two-dimensional radiation profile of a poloidal cross section of a fusion device based on line-integrated measurements along several lines of sight. The reconstruction process is computationally intensive, and ...

2018

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