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Lecture
BrainSpan Atlas of Developing Human Brain
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Data available from the Allen human brain atlases
Covers the data available from the Allen human brain atlases, including gene expression analysis and the BrainSpan Atlas.
Performing a search in the Allen Brain Atlas
Covers the tutorial on performing a search in the Allen Brain Atlas, exploring gene expression data.
The Microcircuits of Striatum in Silico
Explores the reconstruction of a full-scale mouse striatal cellular level model to integrate and interpret striatal data.
Transgenic Mice: Cre-Lines and Optogenetics
Covers transgenic mice using Cre-lines and optogenetics, exploring neural cell manipulation techniques and brain region-specific gene expression.
How to Interpret Gene Expression Heat Maps
Offers a tutorial on interpreting gene expression heat maps from the Allen Institute.
Bulk Transcriptome Analysis: RNA-seq Workflow and Gene Expression Analysis
Explains transcriptomics, RNA-seq workflow, and gene expression analysis for disease biomarkers.
Single-cell and Spatially Resolved RNA-seq
Explores single-cell RNA-seq, tissue dissociation, capture methods, and differential gene expression analysis.
The difficulty of dissociating cells in human brain
Discusses the diversity of neocortical neurons, challenges in dissociating human brain cells, and the evolution of expanded neocortex across mammals.
Methods to Identify Transcriptomic Types
Covers methods to identify transcriptomic types and classify bipolar cells using computational techniques and molecular profiling.
Overview of the Allen Mouse Brain Atlas
Covers the Allen Mouse Brain Atlas, brain regions, gene expression data, and exploration tools.