Classical Molecular Dynamics: Simulation and Integration Algorithms

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Explores molecular dynamics simulations under holonomic constraints, focusing on numerical integration and algorithm formulation.

Molecular Dynamics Simulations: Basics and Algorithms

Covers the basics of molecular dynamics simulations, ensemble properties, classical mechanics formulations, numerical integration, energy conservation, and constraint algorithms.

Molecular dynamics and integrators

Explores molecular dynamics, integrators, trajectory generation, and error monitoring in atomistic modeling.

Molecular Dynamics Basics

Covers the fundamentals of Molecular Dynamics, including the Ergodic Hypothesis, force fields, and periodic boundary conditions.

Monte Carlo Moves in Simulation

Explores Monte Carlo moves in simulation, including trial moves and biased moves, comparing Monte Carlo with Molecular Dynamics.

Molecular Dynamics: Liquid Argon Simulation

Covers the molecular dynamics simulation of liquid argon using Lennard-Jones potential and focuses on equilibration and velocity distribution at equilibrium.

Molecular Dynamics and Monte Carlo: Computational Environment

Covers the computational environment for Molecular Dynamics and Monte Carlo exercises, emphasizing theoretical understanding over coding skills.

Efficiency of Sampling: Ergodicity and Autocorrelation Functions

Explores the efficiency of sampling in molecular dynamics, focusing on ergodicity and autocorrelation functions.

Integration Algorithms for Molecular Dynamics

Explores various Verlet algorithms for molecular dynamics simulations, emphasizing accuracy and efficiency.

Efficient Stochastic Numerical Methods

Explores efficient stochastic numerical methods for modeling and learning, covering topics like the Analytical Engine and kinase inhibitors.