Person
Marco Pasi
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Related publications (6)
Please note that this is not a complete list of this person’s publications. It includes only semantically relevant works. For a full list, please refer to Infoscience.
Sequence-dependent structural properties of B-DNA: what have we learned in 40 years?
John Maddocks, Daiva Petkeviciute, Rahul Sharma, Marco Pasi, Paolo Carloni
The structure of B-DNA, the physiological form of the DNA molecule, has been a central topic in biology, chemistry and physics. Far from uniform and rigid, the double helix was revealed as a flexible and structurally polymorphic molecule. Conformational ch ...
London2021The static and dynamic structural heterogeneities of B-DNA: extending Calladine-Dickerson rules
John Maddocks, Daiva Petkeviciute, Marco Pasi
We present a multi-laboratory effort to describe the structural and dynamical properties of duplex B-DNA under physiological conditions. By processing a large amount of atomistic molecular dynamics simulations, we determine the sequence-dependent structura ...
Oxford University Press (OUP)2019Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics
Microsecond molecular dynamics simulations of B-DNA oligomers carried out in an aqueous environment with a physiological salt concentration enable us to perform a detailed analysis of how potassium ions interact with the double helix. The oligomers studied ...
Oxford University Press2015