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Stuart Anthony Byma

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Related publications (5)

Please note that this is not a complete list of this person’s publications. It includes only semantically relevant works. For a full list, please refer to Infoscience.

IMPACT: Interval-based Multi-pass Proteomic Alignment with Constant Traceback

James Richard Larus, Sahand Kashani, Stuart Anthony Byma

Darwin is a genomics co-processor that achieved a 15000x acceleration on long read assembly through innovative hardware and algorithm co-design. Darwins algorithms and hardware implementation were specifically designed for DNA analysis pipelines. This pape ...

2019

Parallel and Scalable Bioinformatics

Stuart Anthony Byma

The field of genomics is likely to become the largest producer of data as a consequence of the large-scale application of next-generation sequencing technology for biological research and personalized medical treatments. The raw sequence data produced by t ...

EPFL2020

Parallel and Scalable Precise Clustering

James Richard Larus, Stuart Anthony Byma

This paper describes a new technique for parallelizing protein clustering, an important bioinformatics computation for the analysis of protein sequences. Protein clustering identifies groups of proteins that are similar because they share long sequences of ...

ASSOC COMPUTING MACHINERY2020