Publications by Emmanuel Emilien Louis Soubies

Pocket guide to solve inverse problems with GlobalBioIm

Michaël Unser, Daniel Sage, Thanh-An Michel Pham, Laurène Donati, Emmanuel Emilien Louis Soubies, Ferréol Arnaud Marie Soulez, Michael Thompson McCann, Thomas Jean Debarre

GlobalBioIm is an open-source MATLAB (R) library for solving inverse problems. The library capitalizes on the strong commonalities between forward models to standardize the resolution of a wide range of imaging inverse problems. Endowed with an operator-al ...

IOP PUBLISHING LTD2019

Computational Super-Sectioning for Single-Slice Structured-Illumination Microscopy

Michaël Unser, Emmanuel Emilien Louis Soubies

While structured-illumination microscopy (SIM) is inherently a three-dimensional (3-D) technique, many biological questions can be addressed from the acquisition of a single focal plane with high lateral resolution. Unfortunately, the single-slice reconstr ...

2019

Closed-Form Expression of the Fourier Ring-Correlation for Single-Molecule Localization Microscopy

Michaël Unser, Daniel Sage, Thanh-An Michel Pham, Emmanuel Emilien Louis Soubies

Single-molecule localization microscopy (SMLM) is a popular microscopic technique that achieves super resolution imaging by localizing individual blinking molecules in thousands of frames. Therefore, the reconstructed high-resolution image is a combination ...

IEEE2019

Phaseless Diffraction Tomography With Regularized Beam Propagation

Michaël Unser, Demetri Psaltis, Thanh-An Michel Pham, Emmanuel Emilien Louis Soubies, Ferréol Arnaud Marie Soulez, Alexandre Goy, Joowon Lim

In recent years, researchers have obtained impressive reconstructions of the refractive index (RI) of biological objects through the combined use of advanced physics (nonlinear forward model) and regularization. Here, we propose an adaptation of these tech ...

IEEE2018

GlobalBioIm: A Unifying Computational Framework for Solving Inverse Problems

Michaël Unser, Laurène Donati, Emmanuel Emilien Louis Soubies, Ferréol Arnaud Marie Soulez

We present a unifying framework for the development of state-of-the-art reconstruction algorithms in computational optics with a clear separation between the physical (forward model) and signal-related (regularization, incorporation of prior constraints) a ...

OSA2017

Efficient Inversion of Multiple-Scattering Model for Optical Diffraction Tomography

Michaël Unser, Thanh-An Michel Pham, Emmanuel Emilien Louis Soubies

Optical diffraction tomography relies on solving an inverse scattering problem governed by the wave equation. Classical reconstruction algorithms are based on linear approximations of the forward model (Born or Rytov), which limits their applicability to t ...

2017

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