Publications by Yi Zhao | EPFL Graph Search

AIDRES: A database for the decarbonisation of the heavy industry in Europe

François Maréchal, Luc Girardin, Daniel Alexander Florez Orrego, Ivan Daniel Kantor, Shivom Sharma, Julia Granacher, Meire Ellen Gorete Ribeiro Domingos, Rafael Amorim Leandro De Castro Amoedo, Yi Zhao

The AIDRES database aims to support the long-term objective of a fully integrated industrial strategy in the EU 27, providing a service to the European Commission and a catalogue for industries to understand the effectiveness, efficiency and cost of potent ...

Universidad de Las Palmas de Gran Canaria2023

Z-REX uncovers a bifurcation in function of Keap1 paralogs

Yimon Aye, Xuyu Liu, Jesse Poganik, Yi Zhao, Alexandra Krina Van Hall-Beauvais, Kuan-Ting Huang

Studying electrophile signaling is marred by difficulties in parsing changes in pathway flux attributable to on-target, vis-& agrave;-vis off-target, modifications. By combining bolus dosing, knockdown, and Z- REX & mdash;a tool investigating on- target/on ...

eLIFE SCIENCES PUBL LTD2022

Function-guided proximity mapping unveils electrophilic-metabolite sensing by proteins not present in their canonical locales

Yimon Aye, Romain Hamelin, Pierre Alexander Miranda Herrera, Yi Zhao

Enzyme-assisted posttranslational modifications (PTMs) constitute a major means of signaling across different cellular compartments. However, how nonenzymatic PTMs-despite their direct relevance to covalent drug development-impinge on crosscompartment sign ...

National Academy of Sciences2022

Wdr1 and cofilin are necessary mediators of immune-cell-specific apoptosis triggered by Tecfidera

Yimon Aye, Sruthi Raja, Jesse Poganik, Kuan-Ting Huang, Yi Zhao

The mechanism-of-action of many electrohilic drugs remains poorly understood. Here, the authors use a redox-targeting approach to elucidate the basis for the innate immune cell toxicity of dimethyl fumarate, showing that it modifies Keap1 to trigger mitoch ...

Nature Portfolio2021

Clofarabine Commandeers the RNR-alpha-ZRANB3 Nuclear Signaling Axis

Yimon Aye, Yi Zhao

Ribonucleotide reductase (RNR) is an essential enzyme in DNA biogenesis and a target of several chemotherapeutics. Here, we investigate how antileukemic drugs (e.g., clofarabine [CIF]) that target one of the two subunits of RNR, RNR-alpha, affect noncanoni ...

CELL PRESS2020

Neighborhood watch: tools for defining locale-dependent subproteomes and their contextual signaling activities

Yimon Aye, Yi Zhao

Transient associations between numerous organelles-e.g., the endoplasmic reticulum and the mitochondria-forge highly-coordinated, particular environments essential for cross-compartment information flow. Our perspective summarizes chemical-biology tools th ...

ROYAL SOC CHEMISTRY2020

The mRNA-Binding Protein HuR Is a Kinetically-Privileged Electrophile Sensor

Yimon Aye, Jesse Poganik, Yi Zhao, Alexandra Krina Van Hall-Beauvais

The key mRNA-binding proteins HuR and AUF1 are reported stress sensors in mammals. Intrigued by recent reports of sensitivity of these proteins to the electrophilic lipid prostaglandin A2 and other redox signals, we here examined their sensing abilities to ...

2020