Publications by Daniel Maria Busiello

Information Propagation in Multilayer Systems with Higher-Order Interactions across Timescales

Giorgio Nicoletti, Daniel Maria Busiello

Complex systems are characterized by multiple spatial and temporal scales. A natural framework to capture their multiscale nature is that of multilayer networks, where different layers represent distinct physical processes that often regulate each other in ...

American Physical Society2024

ABC transporters are billion-year-old Maxwell Demons

Paolo De Los Rios, Solange Marie Flatt, Daniel Maria Busiello, Stefano Zamuner

ATP-Binding Cassette (ABC) transporters are a broad family of biological machines, found in most prokaryotic and eukaryotic cells, performing the crucial import or export of substrates through both plasma and organellar membranes, and maintaining a steady ...

NATURE PORTFOLIO2023

Individual and combined benefits of different nonequilibrium proofreading mechanisms

Paolo De Los Rios, Daniel Maria Busiello, Stefano Zamuner, Adélaïde Alice Mohr

Genome duplication, transcription, and translation are among many crucial cellular processes that need to be performed with high fidelity. However, those extremely low error rates cannot be explained with simple equilibrium thermodynamic considerations. Th ...

Amer Physical Soc2023

Fluctuations of entropy production of a run-and-tumble particle

Daniel Maria Busiello, Amos Maritan, Deepak Gupta

Out-of-equilibrium systems continuously generate entropy, with its rate of production being a fingerprint of nonequilibrium conditions. In small-scale dissipative systems subject to thermal noise, fluctuations of entropy production are significant. Hithert ...

AMER PHYSICAL SOC2023

Emergent thermophoretic behavior in chemical reaction systems

Paolo De Los Rios, Shiling Liang, Daniel Maria Busiello

Exposing a solution to a temperature gradient can lead to the accumulation of particles on either the cold or warm side. This phenomenon is known as thermophoresis, and its microscopic origin is still debated. Here, we show that thermophoresis can be obser ...

IOP Publishing Ltd2022

Hyperaccurate bounds in discrete-state Markovian systems

Daniel Maria Busiello

Generalized empirical currents represent a vast class of thermodynamic observables of mesoscopic systems. Their fluctuations satisfy the thermodynamic uncertainty relations (TURs), as they can be bounded by the average entropy production. Here, we derive a ...

2022

Mutual information in changing environments: Nonlinear interactions, out-of-equilibrium systems, and continuously varying diffusivities

Daniel Maria Busiello, Giorgio Nicoletti

Biochemistry, ecology, and neuroscience are examples of prominent fields aiming at describing interacting systems that exhibit nontrivial couplings to complex, ever-changing environments. We have recently shown that linear interactions and a switching envi ...

AMER PHYSICAL SOC2022

Information-driven transitions in projections of underdamped dynamics

Daniel Maria Busiello, Giorgio Nicoletti, Amos Maritan

Low-dimensional representations of underdamped systems often provide useful insights and analytical tractability. Here, we build such representations via information projections, obtaining an optimal model that captures the most information on observed spa ...

AMER PHYSICAL SOC2022

Emergence of synchronised and amplified oscillations in neuromorphic networks with long-range interactions

Samir Suweis, Daniel Maria Busiello

Neuromorphic networks can be described in terms of coarse-grained variables, where emergent sus-tained behaviours spontaneously arise if stochasticity is properly taken into account. For example it has been recently found that a directed linear chain of co ...

ELSEVIER2021

Dissipation-driven selection of states in non-equilibrium chemical networks

Paolo De Los Rios, Shiling Liang, Francesco Piazza, Daniel Maria Busiello

Life has most likely originated as a consequence of processes taking place in non-equilibrium conditions (e.g. in the proximity of deep-sea thermal vents) selecting states of matter that would have been otherwise unfavorable at equilibrium. Here we present ...

2021