Publications by Ünsal Öztürk

Efficient Neural Clustering and Compression of Strings Through Approximate Euclidean Embeddings of the Levenshtein Distance

Efficient information retrieval is a fundamental requirement in a wide array of applications, ranging from bioinformatics to database systems, and critically hinges on the complexity of an underlying distance metric. This work presents a novel approach to ...

Institute of Electrical and Electronics Engineers Inc.2024

Self-indexing Algorithms for Graph Representations of Genomic References

Ünsal Öztürk

High-throughput sequencing technologies continue to become more cost-effective and accurate and produce an immense volume of sequencing data. This data must be efficiently stored, transported, searched, browsed, and analysed to be useful in genomic pipelin ...

EPFL2024

FM -Directories: Extending the Burrows-Wheeler Transform for String Labeled Vertex Graphs of (Almost) Arbitrary Topology

Marco Mattavelli, Ünsal Öztürk

IEEE COMPUTER SOC2023

MPEG-G Reference-Based Compression of Unaligned Reads Through Ultra-Fast Alignments

Marco Mattavelli, Simone Casale Brunet, Ünsal Öztürk

IEEE2022