Publications by Benjamin Tobias Gallusser

TRACKASTRA: Transformer-Based Cell Tracking for Live-Cell Microscopy

Martin Weigert, Benjamin Tobias Gallusser

Cell tracking is a ubiquitous image analysis task in live-cell microscopy. Unlike multiple object tracking (MOT) for natural images, cell tracking typically involves hundreds of similar-looking objects that can divide in each frame, making it a particularl ...

Springer Science and Business Media Deutschland GmbH2025

Label-Efficient Deep Learning Methods for Event Detection, Object Segmentation and Cell Tracking in Biological Microscopy Images

Benjamin Tobias Gallusser

Microscopy is one of the essential tools to quantify and advance our understanding of living systems. Modern digital microscopes enable measurements at unprecedented spatiotemporal scale, so automated processing methods are required to complete tasks such ...

EPFL2024

Self-supervised Dense Representation Learning for Live-Cell Microscopy with Time Arrow Prediction

Martin Weigert, Benjamin Tobias Gallusser, Max Stieber

State-of-the-art object detection and segmentation methods for microscopy images rely on supervised machine learning, which requires laborious manual annotation of training data. Here we present a self-supervised method based on time arrow prediction pre-t ...

Springer International Publishing Ag2023

Deep neural network automated segmentation of cellular structures in volume electron microscopy

Martin Weigert, Benjamin Tobias Gallusser

Volume electron microscopy is an important imaging modality in contemporary cell biology. Identification of intracellular structures is a laborious process limiting the effective use of this potentially powerful tool. We resolved this bottleneck with autom ...

Rockefeller University Press2022