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InterPro--an integrated documentation resource for protein families, domains and functional sites

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InterPro--an integrated documentation resource for protein families, domains and functional sites

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Generative power of a protein language model trained on multiple sequence alignments

De novo protein design by inversion of the AlphaFold structure prediction network

A Geometric Transformer for Structural Biology: Development and Applications of the Protein Structure Transformer

Correlations from structure and phylogeny combine constructively in the inference of protein partners from sequences

Towards automating de novo protein design for novel functionalities: controlling protein folds and protein-protein interactions

SPServer: split-statistical potentials for the analysis of protein structures and protein-protein interactions

Phylogenetic correlations can suffice to infer protein partners from sequences

Inferring interaction partners from protein sequences using mutual information

Rosetta FunFolDes - A general framework for the computational design of functional proteins

New Techniques for Ancient Proteins: Direct Coupling Analysis Applied on Proteins Involved in Iron Sulfur Cluster Biogenesis