Publications related to Subsampling as an economic consequence of using whole genome sequence data in landscape genomics: how to maximize environmental information from a reduced number of locations?

Random sampling of bandlimited signals on graphs

Pierre Vandergheynst, Rémi Gribonval, Gilles Puy, Nicolas Tremblay

We study the problem of sampling

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-bandlimited signals on graphs. We propose two sampling strategies that consist in selecting a small subset of nodes at random. The first strategy is non-adaptive, \ie, independent of the graph structure, and its perform ...

2015

Models and Algorithms for Comparative Genomics

Mingfu Shao

The deluge of sequenced whole-genome data has motivated the study of comparative genomics, which provides global views on genome evolution, and also offers practical solutions in deciphering the functional roles of components of genomes. A fundamental comp ...

EPFL2015

Analyte quantification with Comprehensive Two-Dimensional Gas Chromatography: Assessment of methods for baseline correction, peak delineation, and matrix effect elimination for real samples

Jeremy Samuel Arey, Jonas Gros, Saer Samanipour, Petros Dimitriou Christidis, Auréline Grange

Comprehensive two-dimensional gas chromatography (GC x GC) is used widely to separate and measure organic chemicals in complex mixtures. However, approaches to quantify analytes in real, complex samples have not been critically assessed. We quantified 7 PA ...

Elsevier2015

Riding the whole-genome data tsunami: a landscape genomic study of local adaptation in Moroccan sheep and goats

Stéphane Joost, Sylvie Stucki, Kevin Leempoel

In Morocco, like in other developing countries, small ruminants play an important role in the livelihood of a large proportion of farmers and landless shepherds. Conserving traditional breeds is essential in these countries since they are able to prosper i ...

2014

Sampling based on timing: Time encoding machines on shift-invariant subspaces

Martin Vetterli, David Gontier

Sampling information using timing is an approach that has received renewed attention in sampling theory. The question is how to map amplitude information into the timing domain. One such encoder, called time encoding machine, was introduced by Lazar and To ...

Elsevier2014

Patient Privacy in the Genomic Era

Jean-Pierre Hubaux, Erman Ayday, Jean Louis Raisaro

According to many scientists and clinicians, genomics is taking on a key role in the field of medicine. Impressive advances in genome sequencing have opened the way to a variety of revolutionary applications in modern healthcare. In particular, the increas ...

2014

Genome analysis of Desulfotomaculum kuznetsovii reveals a physiological similarity with Pelotomaculum thermopropionicum

Rizlan Bernier-Latmani

Desulfotomaculum kuznetsovii is a moderately thermophilic member of the polyphyletic spore-forming genus Desulfotomaculum in the family Peptococcaceae. This species is of interest because it originates from deep subsurface thermal mineral water at a depth ...

Genomic Stand Consort2013

Computational analysis of ultraconserved non-coding DNA elements in vertebrate genomes

Slavica Dimitrieva Janeva

Recent advancements in DNA sequencing technologies, accompanied by parallel development of sophisticated computational methods, offer an unprecedented opportunity to explore and study the genetic material of many organisms. However, despite the tremendous ...

EPFL2013

PyroTRF-ID: a novel bioinformatics methodology for the affiliation of terminal-restriction fragments using 16S rRNA gene pyrosequencing data

Christof Holliger, Julien Maillard, Pierre Rossi, Jacques Rougemont, David Gregory Weissbrodt, Noam Shani, Lucas Sinclair

The PyroTRF-ID bioinformatics methodology (http://bbcf.epfl.ch/PyroTRF-ID/) was developed to combine pyrosequencing and T-RFLP for describing microbial communities and identifying T-RFs by comparison of experimental and digital T-RFLP profiles obtained fro ...

2013

Multisensor Change Detection with Nonlinear Canonical Correlation

Devis Tuia, Frank Grégoire Jean de Morsier

The analysis of multi-modal and multi-sensor images is nowadays of paramount importance for Earth Observation (EO) applications. There exist a variety of methods that aim at fusing the different sources of information to obtain a compact representation of ...

2013

Subsampling as an economic consequence of using whole genome sequence data in landscape genomics: how to maximize environmental information from a reduced number of locations?

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Random sampling of bandlimited signals on graphs

Models and Algorithms for Comparative Genomics

Analyte quantification with Comprehensive Two-Dimensional Gas Chromatography: Assessment of methods for baseline correction, peak delineation, and matrix effect elimination for real samples

Riding the whole-genome data tsunami: a landscape genomic study of local adaptation in Moroccan sheep and goats

Sampling based on timing: Time encoding machines on shift-invariant subspaces

Patient Privacy in the Genomic Era

Genome analysis of Desulfotomaculum kuznetsovii reveals a physiological similarity with Pelotomaculum thermopropionicum

Computational analysis of ultraconserved non-coding DNA elements in vertebrate genomes

PyroTRF-ID: a novel bioinformatics methodology for the affiliation of terminal-restriction fragments using 16S rRNA gene pyrosequencing data

Multisensor Change Detection with Nonlinear Canonical Correlation

Computational analysis of ultraconserved non-coding DNA elements in vertebrate genomes

Models and Algorithms for Comparative Genomics

Analyte quantification with Comprehensive Two-Dimensional Gas Chromatography: Assessment of methods for baseline correction, peak delineation, and matrix effect elimination for real samples

Patient Privacy in the Genomic Era

Random sampling of bandlimited signals on graphs

Genome analysis of Desulfotomaculum kuznetsovii reveals a physiological similarity with Pelotomaculum thermopropionicum

Riding the whole-genome data tsunami: a landscape genomic study of local adaptation in Moroccan sheep and goats

Multisensor Change Detection with Nonlinear Canonical Correlation

Sampling based on timing: Time encoding machines on shift-invariant subspaces

PyroTRF-ID: a novel bioinformatics methodology for the affiliation of terminal-restriction fragments using 16S rRNA gene pyrosequencing data