Sequence alignmentIn bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences. Aligned sequences of nucleotide or amino acid residues are typically represented as rows within a matrix. Gaps are inserted between the residues so that identical or similar characters are aligned in successive columns.
Multiple sequence alignmentMultiple sequence alignment (MSA) may refer to the process or the result of sequence alignment of three or more biological sequences, generally protein, DNA, or RNA. In many cases, the input set of query sequences are assumed to have an evolutionary relationship by which they share a linkage and are descended from a common ancestor. From the resulting MSA, sequence homology can be inferred and phylogenetic analysis can be conducted to assess the sequences' shared evolutionary origins.
Sequential pattern miningSequential pattern mining is a topic of data mining concerned with finding statistically relevant patterns between data examples where the values are delivered in a sequence. It is usually presumed that the values are discrete, and thus time series mining is closely related, but usually considered a different activity. Sequential pattern mining is a special case of structured data mining. There are several key traditional computational problems addressed within this field.
Distance matrixIn mathematics, computer science and especially graph theory, a distance matrix is a square matrix (two-dimensional array) containing the distances, taken pairwise, between the elements of a set. Depending upon the application involved, the distance being used to define this matrix may or may not be a metric. If there are N elements, this matrix will have size N×N. In graph-theoretic applications, the elements are more often referred to as points, nodes or vertices. In general, a distance matrix is a weighted adjacency matrix of some graph.
SystemA system is a group of interacting or interrelated elements that act according to a set of rules to form a unified whole. A system, surrounded and influenced by its environment, is described by its boundaries, structure and purpose and is expressed in its functioning. Systems are the subjects of study of systems theory and other systems sciences. Systems have several common properties and characteristics, including structure, function(s), behavior and interconnectivity.
Methods of detecting exoplanetsAny planet is an extremely faint light source compared to its parent star. For example, a star like the Sun is about a billion times as bright as the reflected light from any of the planets orbiting it. In addition to the intrinsic difficulty of detecting such a faint light source, the light from the parent star causes a glare that washes it out. For those reasons, very few of the exoplanets reported have been observed directly, with even fewer being resolved from their host star.
HipparcosHipparcos was a scientific satellite of the European Space Agency (ESA), launched in 1989 and operated until 1993. It was the first space experiment devoted to precision astrometry, the accurate measurement of the positions of celestial objects on the sky. This permitted the first high-precision measurements of the intrinsic brightnesses (compared to the less precise apparent brightness), proper motions, and parallaxes of stars, enabling better calculations of their distance and tangential velocity.
Star systemA star system or stellar system is a small number of stars that orbit each other, bound by gravitational attraction. A large group of stars bound by gravitation is generally called a star cluster or galaxy, although, broadly speaking, they are also star systems. Star systems are not to be confused with planetary systems, which include planets and similar bodies (such as comets). A star system of two stars is known as a binary star, binary star system or physical double star.
Thermodynamic systemA thermodynamic system is a body of matter and/or radiation, considered as separate from its surroundings, and studied using the laws of thermodynamics. Thermodynamic systems may be isolated, closed, or open. An isolated system exchanges no matter or energy with its surroundings, whereas a closed system does not exchange matter but may exchange heat and experience and exert forces. An open system can interact with its surroundings by exchanging both matter and energy.
