On-surface transmetalation of metalloporphyrins

Increasing the complexity of 2D metal-organic networks has led to the fabrication of structures with interesting magnetic and catalytic properties. However, increasing complexity by providing different coordination environments for different metal types imposes limitations on their synthesis if the controlled placement of one metal type into one coordination environment is desired. Whereas metal insertion into free-base porphyrins at the vacuum/solid interface has been thoroughly studied, providing detailed insight into the mechanisms at play, the chemical interaction of a metal atom with a metallated porphyrin is rarely investigated. Herein, the breadth of metalation reactions is augmented towards the metal exchange of a metalloporphyrin through the deliberate addition of atomic metal centers. The cation of Fe(ii)-tetraphenylporphyrins can be replaced by Co in a redox transmetalation-like reaction on a Au(111) surface. Likewise, Cu can be replaced by Co. The reverse reaction does not occur, i.e. Fe does not replace Co in the porphyrin. This non-reversible exchange is investigated in detail by X-ray absorption spectroscopy complemented by scanning tunneling microscopy. Density functional theory illuminates possible reaction pathways and leads to the conclusion that the transmetalation proceeds through the adsorption of initially metallic (neutral) Co onto the porphyrin and the expulsion of Fe towards the surface accompanied by Co insertion. Our findings have important implications for the fabrication of porphyrin layers on surfaces when subject to the additional deposition of metals. Mixed-metal porphyrin layers can be fabricated by design in a solvent-free process, but conversely care must be taken that the transmetalation does not proceed as an undesired side reaction.

Oxygen Dissociation by Concerted Action of Di-Iron Centers in Metal-Organic Coordination Networks at Surfaces: Modeling Non-Heme Iron Enzymes

Alexandre Dmitriev, Pietro Gambardella, Klaus Kern, Sebastian Stepanow

The high chemical reactivity of unsaturated metal sites is a key factor for the development of novel devices with applications in sensor engineering and catalysis. It is also central in the research for sustainable energy concepts, e.g., the efficient production and conversion of chemical fuels. Here, we study the process of oxygen dissociation by a surface-supported metal-organic network that displays close structural and functional analogies with the cofactors of non-heme enzymes. We synthesize a two-dimensional array of chemically active di-iron sites on a Cu(001) surface where molecular oxygen readily dissociates at room temperature. We provide an atomic-level structural and electronic characterization before and after reaction by combining scanning tunneling microscopy, X-ray absorption spectroscopy, and density functional theory. The latter identifies a novel mechanism for O-2 dissociation controlled by the cooperative catalytic action of two Fe2+ ions. The high structural flexibility of the organic ligands, the mobility of the metal centers, and the hydrogen bonding formation are shown to be essential for the functionality of these active centers allowing to mimick biologically relevant reactions in a confined environment.

2011

Investigation of low-dimensional supramolecular architectures by low-temperature scanning tunneling microscopy

Sylvain Clair

In this thesis we report investigations on supramolecular architectures assembled at well-defined metal surfaces. Supramolecular chemistry is dedicated to the study and use of non-covalent interactions to build highly organized molecular arrangements, aiming ultimately at creating systems with tailored properties and useful functions. The adaptation of its powerful principles to fabricate molecular systems at surfaces has already been proven to be very promising; the extended possibilities for the choice of on the one hand molecules with defined size, shape, symmetry and function, and on the other hand substrates with controlled composition, symmetry and patterning allow for a quasi-infinite tuning of the structure and properties of the respective assemblies. The Scanning Tunneling Microscope (STM) is a tool particularly efficient for the nanoscale elucidation of supramolecular systems at surfaces, simultaneously providing topographic and spectroscopic information at the single-atom level. In this regard, a new Low-Temperature STM (LT-STM) operational at temperatures in the range 5 to 400 K has been constructed. A detailed description of the instrument is provided and the demonstration of its exquisite performance represents a major achievement. In addition to local STM studies, complementary experiments were performed with a synchrotron radiation source using integral techniques, namely X-ray Absorption Spectroscopy (XAS) and X-ray Magnetic Circular Dichroism (XMCD). We present results obtained with the linear organic linker 1,4-benzenedicarboxylic acid (terephthalic acid - TPA) on the Au(111), Cu(111) and Cu(100) surfaces. The three-dimensional design principles of supramolecular chemistry could be successfully adapted to these low-dimensional systems. TPA molecules adsorbed on Au(111) organize in two-dimensional molecular sheets, wherein the typical one-dimensional hydrogen-bonded chain motif is found. We show that the inhomogeneities induced by the surface reconstruction can be used to examine the response of the supramolecular self-assembly. In particular, variations in the hydrogen bond length of up to 20% are encountered. On Cu(111), a strict commensurability of the supramolecular sheet to the substrate is not possible because of the reduced lattice spacing of the latter, and the creation of defects is analyzed. Due to their peculiar reactivity, the elbow sites of the reconstructed Au(111) surface act as nucleation centers in the epitaxial growth of transition metals (Fe, Co, Ni), leading to the formation of regular arrays of nanoscale metallic islands. We take advantage of this patterning to steer the formation of metallosupramolecular nano-architectures. Co-deposited TPA molecules attack both Fe and Co clusters and metal-carboxylate linkages evolve. Depending on the deposition parameters, nanoporous grids, mesoscopically organized stripes or truly one-dimensional linkages are obtained. Furthermore, the dynamics of the formation of the nanogrids are monitored in situ. Finally, we report investigations of the magnetic and electronic properties of surface-supported coordination architectures by means of XAS and XMCD. We studied Fe-terephthalate systems engineered on a Cu(100) substrate. Both mononuclear Fe(TPA)4 compounds and diiron centers structures in 2D Fe-TPA lattices exhibit a paramagnetic behavior. Moreover, we demonstrate the decisive influence of the ligand rather than the substrate on the electronic ground state of the metal centers, thus illustrating new vistas to effectively tailor the valence state and magnetic moment of transition metal atoms at surfaces.

EPFL2004

Design of Surface-Supported Bio-inspired Networks for CO2 and O2 Activation at Room Temperature

Daniel Eduardo Hurtado Salinas

The structure of a biological system defines its function. Therefore, nature has developed sophisticated systems that catalyze chemical reactions that are vital for life on earth. For instance, the photosynthesis is a biological process that is partially regulated by the metallo-enzyme RuBisCO (Ribulose-1,5-bisphosphate carboxylase/oxygenase), whose function is to catalyze the capture and transfer of CO2 into organic molecules. This carboxylation reaction occurs at the active site, where a magnesium ion (Mg2+) is bound to organic molecules with carboxylate (COO-) and amine (NH2) functional groups. In the last decades, supramolecular chemistry has proven to be a valid approach to replicate the structural characteristics of these natural metal-organic systems. Metal atoms and organic molecules are used as building blocks to form two-dimensional (2D) metal-organic networks (MONs) on metal surfaces, through a self-assembly process that occurs spontaneously. In these systems the molecules bind to the metal centers and control their oxidation states that, as found in metallo-enzymes, is crucial to perform a catalytic task. Therefore, these supramolecular assemblies show promising features to be explored for heterogeneous catalysis. The main objective of this thesis is to reverse the structure-function equation, that is: instead of finding specific functions of well-known 2D structures for future applications, 2D structures are designed to reproduce the specific functions of well-known bio-systems. Thus, inspired in the structure of the active site of RuBisCO, 2D Mg-based supramolecular assemblies are rationally designed on Cu(100) or Mg(0001) surfaces at room temperature (RT) as a platform for CO2 adsorption. This work is the first study of self-assembly of alkaline earth metal atoms (Mg) with organic molecules ((1,4-benzenedicarboxylic acid (TPA) and 2,4,6-tris(4-aminophenyl)-1,3,5-triazine (TAPT)) on metal surfaces. The first part of this thesis investigates the self-assembly of TAPT molecules. Scanning Tunneling Microscopy (STM) and High Resolution X-ray Photoemission Spectroscopy (HR-XPS) demonstrate that the molecules typically semi-deprotonate to form MONs with the adatoms from the host substrates. The exposure of these structures to CO2 results in the carboxylation of the amino groups. The second part proves that the COOH moieties of TPA molecules fully-deprotonate to form homo-molecular structures. The incorporation of Mg adatoms result in ionic MONs, which reproduce the carboxylate environment of the active site of RuBiSCO. STM, XPS and Density Functional Theory (DFT) analyze the structural changes, the chemical reactions and charge transfer during either the CO2 or O2 adsorption on the Mg2+ centers. The last part focusses on the co-deposition of both molecules to form 2D metallic-hetero-molecular networks with Mg2+ centers. The role of the Mg2+ centers as active sites for molecular adsorption and model systems for gas storage is studied. STM reveals that CO2 partially modifies the network towards a configuration that resembles the active site of RuBisCO. The formation of 3D structures to enhance CO2 adsorption is also evaluated.