MATHICSE Technical Report : Modelling spatially dependent functional data via regression with differential regularization

We propose a method for modelling spatially dependent functional data, based on regression with differential regularization. The regularizing term enables to include problem-specific information about the spatio-temporal variation of phenomenon under study, formalized in terms of a time-dependent partial differential equation. The method is implemented using a discretization based on finite elements in space and finite differences in time. This non-tensor product basis allows to efficiently handle data distributed over complex domains and where the shape of the domain influences the phenomenon behavior. Moreover, the method can comply with specific conditions at the boundary of the domain of interest. Simulation studies compare the proposed model to available techniques for spatio-temporal data. The method is also illustrated via an application to the study of blood-flow velocity field in a carotid artery affected by atherosclerosis, starting from echo-color doppler and magnetic resonance imaging data.

Modeling spatially dependent functional data via regression with differential regularization

Eleonora Arnone, Fabio Nobile

We propose a method for modelling spatially dependent functional data, based on regression with differential regularization. The regularizing term enables to include problem-specific information about the spatio-temporal variation of phenomenon under study, formalized in terms of a time-dependent partial differential equation. The method is implemented using a discretization based on finite elements in space and finite differences in time. This non-tensor product basis allows to effciently handle data distributed over complex domains and where the shape of the domain influences the phenomenon behavior. Moreover, the method can comply with specific conditions at the boundary of the domain of interest. Simulation studies compare the proposed model to available techniques for spatio-temporal data. The method is also illustrated via an application to the study of blood-flow velocity field in a carotid artery affected by atherosclerosis, starting from echo-color doppler and magnetic resonance imaging data.

2019

Analysis and numerical simulation of viscoelastic flows

Andrea Bonito

Mathematical and numerical aspects of viscoelastic flows are investigated here. Two simplified mathematical models are considered. They are motivated by a splitting algorithm for solving viscoelastic flows with free surfaces. The first model is a simplified Oldroyd-B model. Existence on a fixed time interval is proved in several Banach spaces provided the data are small enough. Short time existence is also proved for arbitrarily large data in Hölder spaces for the time variable. These results are based on the maximal regularity property of the Stokes operator and on the analycity behavior of the corresponding semi-group. A finite element discretization in space is then proposed. Existence of the numerical solution is proved for small data, as well as a priori error estimates, using an implicit function theorem framework. Then, the extension of these results to a stochastic simplified Hookean dumbbells model is discussed. Because of the presence of the Brownian motion, existence in a fixed time interval, provided the data are small enough, is proved only in some of the Banach spaces considered previously. The dumbbells' elongation is split in two parts, one satisfying a standart stochastic differential equation, the other satisfying a partial differential equation with a stochastic source term. A finite element discretization in space is also proposed. Existence of the numerical solution is proved for small data, as well as a priori error estimates. A numerical algorithm for solving viscoelastic flows with free surfaces is also described. This algorithm is based on a splitting method in time and two different meshes are used for the space discretization. Convergence of the numerical model is checked for the pure extensional flow and the filling of a pipe. Then, numerical results are reported for the stretching of a filament and for jet buckling.

EPFL2006

Fluid-structure interaction for vascular flows: From supercomputers to laptops

Claudia Maria Colciago, Simone Deparis, Davide Forti

Several models exist for the simulation of vascular flows; they span from simple circuit models to full three-dimensional ones that take into account detailed features of the blood and of the arterialwall. Eachmodel comeswith both benefits and drawbacks, the main denominator being a compromise between detailed resolution requirements versus computational time. We first present a fluid-structure interaction computationalmodelwhere both the fluid and the structure are three dimensional. In particular, the fluid includes modeling of large eddies by the variationalmultiscalemethod. After time and space discretizations carried out by finite differences and finite elements, respectively, we set up a parallel solver based ondomain decomposition and a FaCSI preconditioner. These simulations allow one to capture details of the flow dynamics and of the structure deformation even in the transitional regime characterizing hemodynamics in the aorta. It takes roughly 10 hours to complete a simulation of one heartbeat with 35 million degrees of freedom on 2048 cores. We then reduce both the model and its numerical complexity. The structural model is simplified to a two-dimensional membrane located at the fluid-structure interface and the fluid computational domain is fixed. For a fixed geometry andmesh, these assumptions allow one to apply proper orthogonal decomposition and generate a space discretization which has only a few dozen degrees of freedom. It is then possible to perform the simulation of one heartbeat on a laptop in less than one second. Themodeling and numerical reduction therefore allows a dramatic reduction of computational time. However, the price to pay comes, on the one hand, in terms of the preparation of a reduced basis specific to the patient and the geometry of the vessel and, on the other hand, with a detriment of certain quantities of interest. For example, when using a finite element discretization with 9 million degrees of freedom, the offline part takes about 12 hours on 720 cores for the example provided in this work; in this case, the flow profiles in the aorta are pretty close to the full three-dimensional

De Gruyter2017

Fluid-structure interaction for vascular flows: From supercomputers to laptops

Claudia Maria Colciago, Simone Deparis, Davide Forti

De Gruyter2017