Trellises of Molecular Oxygen on Anatase TiO2(101)

The adsorption of molecular oxygen has important implications for the catalytic activity of oxide surfaces, especially for oxidative TiO2 catalysts. In the case of anatase TiO2(101), several studies have noted the importance of surface defects which stabilize the adsorption of oxygen molecules because of charge transfer. Further oxygen adsorption via this mechanism is precluded once a stoichiometric TiO2 surface is attained. Here, the adsorption of oxygen molecules was re enabled through a simple modification of sample cleaning procedures, resulting in the formation of a well-ordered trellis arrangement of oxygen molecules. The trellis is strongly passivating and does not affect the band gap of the pristine anatase substrate. Furthermore, they induce the extension of anatase terraces up to 100 angstrom wide. The atomic and electronic structures of the trellis were investigated using scanning tunneling microscopy experimentation and density functional theory calculations.

Design of Surface-Supported Bio-inspired Networks for CO2 and O2 Activation at Room Temperature

Daniel Eduardo Hurtado Salinas

The structure of a biological system defines its function. Therefore, nature has developed sophisticated systems that catalyze chemical reactions that are vital for life on earth. For instance, the photosynthesis is a biological process that is partially regulated by the metallo-enzyme RuBisCO (Ribulose-1,5-bisphosphate carboxylase/oxygenase), whose function is to catalyze the capture and transfer of CO2 into organic molecules. This carboxylation reaction occurs at the active site, where a magnesium ion (Mg2+) is bound to organic molecules with carboxylate (COO-) and amine (NH2) functional groups. In the last decades, supramolecular chemistry has proven to be a valid approach to replicate the structural characteristics of these natural metal-organic systems. Metal atoms and organic molecules are used as building blocks to form two-dimensional (2D) metal-organic networks (MONs) on metal surfaces, through a self-assembly process that occurs spontaneously. In these systems the molecules bind to the metal centers and control their oxidation states that, as found in metallo-enzymes, is crucial to perform a catalytic task. Therefore, these supramolecular assemblies show promising features to be explored for heterogeneous catalysis. The main objective of this thesis is to reverse the structure-function equation, that is: instead of finding specific functions of well-known 2D structures for future applications, 2D structures are designed to reproduce the specific functions of well-known bio-systems. Thus, inspired in the structure of the active site of RuBisCO, 2D Mg-based supramolecular assemblies are rationally designed on Cu(100) or Mg(0001) surfaces at room temperature (RT) as a platform for CO2 adsorption. This work is the first study of self-assembly of alkaline earth metal atoms (Mg) with organic molecules ((1,4-benzenedicarboxylic acid (TPA) and 2,4,6-tris(4-aminophenyl)-1,3,5-triazine (TAPT)) on metal surfaces. The first part of this thesis investigates the self-assembly of TAPT molecules. Scanning Tunneling Microscopy (STM) and High Resolution X-ray Photoemission Spectroscopy (HR-XPS) demonstrate that the molecules typically semi-deprotonate to form MONs with the adatoms from the host substrates. The exposure of these structures to CO2 results in the carboxylation of the amino groups. The second part proves that the COOH moieties of TPA molecules fully-deprotonate to form homo-molecular structures. The incorporation of Mg adatoms result in ionic MONs, which reproduce the carboxylate environment of the active site of RuBiSCO. STM, XPS and Density Functional Theory (DFT) analyze the structural changes, the chemical reactions and charge transfer during either the CO2 or O2 adsorption on the Mg2+ centers. The last part focusses on the co-deposition of both molecules to form 2D metallic-hetero-molecular networks with Mg2+ centers. The role of the Mg2+ centers as active sites for molecular adsorption and model systems for gas storage is studied. STM reveals that CO2 partially modifies the network towards a configuration that resembles the active site of RuBisCO. The formation of 3D structures to enhance CO2 adsorption is also evaluated.

EPFL2018

Alignment of energy levels in amorphous oxides and at semiconductor-water interfaces

Zhendong Guo

We conduct a detailed investigation of defects in two representative amorphous oxides: amorphous Al2O3 (am-Al2O3) and TiO2 (am-TiO2), by combining ab initio molecular dynamics (MD) simulations and hybrid functional calculations. Our results indicate that oxygen vacancies and interstitials occur neither in am-Al2O3 nor in am-TiO2 due to structural rearrangements which assimilate the defect structure, and that the injection of extra holes can lead to the formation of O-O peroxy linkages. In am-Al2O3, hydrogen is found to be amphoteric. Based on localized Wannier functions, we identify the nominal charge state and the composition of the defect core units related to C and N impurities in am-Al2O3, which are found to depend on the total charge set in the simulation cell. Through the adopted electron counting rule, we assess that carbon and nitrogen impurities are only found in neutral and in singly positive charge states, respectively, indicating that none of them gives charge transition levels in am-Al2O3. In addition, those defect core units are shown to incorporate a varying number of oxygen atoms, by which their formation energy is dependent on the oxygen chemical potential. In addition, we propose an exchange mechanism for hole transport in am-TiO2 that relies on the simultaneous breaking and forming of O-O peroxy linkages that share one O atom. Through the use of nudged-elastic-band calculations, a hopping path as long as 1.2 nm with barriers of 0.3-0.5 eV is demonstrated, suggesting that hole diffusion through O-O peroxy linkages is viable in am-TiO2. In this work, we also determine the band alignment between various semiconductors and liquid water by combining MD simulations of atomistic interface models, electronic-structure calculations at the hybrid-functional and GW levels, and a computational standard hydrogen electrode (SHE). Our study comprises GaAs, GaP, GaN, CdS, ZnO, SnO2, rutile and anatase TiO2. For each semiconductor, we generate atomistic interface models with liquid water at the pH corresponding to the point of zero charge. The MD simulations are started from initial configurations, in which the water molecules are either molecularly (m) or dissociatively (d) adsorbed on the semiconductor surface. The calculated band offsets are found to be strongly influenced by the adsorption mode at the semiconductor-water interface, leading to differences larger than 1 eV between m and d models of the same semiconductor. We then assess the accuracy of various ab initio electronic-structure schemes in determining the band alignment. In the last part, we try to evaluate photocatalysts for water-splitting by considering the surface coverage and the energy alignment. We determine surface concentrations of water molecules, protons, and hydroxyl ions adsorbed at the semiconductor-water interfaces mentioned above as a function of pH. This is achieved through the calculation of the acidity constants at the surface sites, which are derived from ab initio MD simulations and a grand-canonical formulation of adsorbates. It is finally shown how the potential of a semiconductor material as photocatalysts for water splitting can be inferred by combining the nature of the surface coverage and the alignment of the band edges to the relevant redox levels.

EPFL2019

Electronic Transport in 2D Materials with Strong Spin-orbit Coupling

Artem Pulkin

The thesis describes the computational study of structural, electonic and transport properties of monolayer transition metal dichalcogenides (TMDs) in the stable 2H and the metastable 1T' phases. Several aspects have been covered by the study including the electronic properties of the topological quantum spin Hall (QSH) state in the 1T' monolayer phase as well as the effects of strain, periodic line defects, interfaces and edges of monolayer TMDs. The electronic properties of the bulk monolayer phases were described by the ab-initio density functional theory framework while the electronic and transport properties of 1D defects were calculated using the non-equilibrium Green's function formalism. A specific focus was made on the transport of spin-polarized charge carriers across line defects in the monolayer 2H phase. Subject to energy, pseudomomentum and spin conservation, the size of the transport gap is governed by both bulk properties of a material and symmetries of a line defect. Outside the transport gap energy region, the charge carriers are discriminated with respect to their spin resulting in the spin polarization of the transmitted current. Next, the properties of the metastable monolayer 1T' phase were studied. The presence of a sufficiently large band gap is crucial to observe the QSH phase in the family of materials by probing the topological boundary states. The meV-order band gaps of the 1T' phase of monolayer TMDs were found to be sensitive to materials' lattice constants suggesting the control of the band gap size by strain. In particular, the electronic band structure and the size of the band gap in monolayer 1T'-WSe2 were found to be in agreement with spectroscopy studies. The topologically protected states at the edges of the monolayer 1T' phase as well as at the boundaries between the topological 1T' phase and the trivial 2H phase of monolayer TMDs were studied. Specific atomic structure configurations were suggested to observe experimentally the topological protection of the charge carrier transport against back-scattering. Finally, in the context of lateral semiconducting device engineering, the electronic and transverse transport properties of 2H-1T' phase boundaries as well as the dimerization defects in the 1T' phase were investigated. Both kinds of defects considered exhibit a relatively large transmission probability for the charge carriers crossing the defects. However, the differences between the shapes of bulk bands of the two phases open a sizeable transport gap for charge carriers crossing periodic domain boundaries between the monolayer 2H and 1T' phases. The calculated formation energies of dimerization defects were found to be relatively low suggesting their high concentration in real samples of monolayer 1T'-TMDs. Additionally, the thesis includes studies of magnetic dopants on the surface of Bi2Te3 and atomic vacancies in monolayer 2H-MoSe2 where the electronic properties of point defects were calculated and compared to experimental results. The two possible adsorption sites of Fe on the surface of Bi2Te3 both show a large out-of-plane magnetic anisotropy in agreement with experiments. The calculated local electronic properties of Se vacancies in monolayer 2H-MoSe2 show the presence of in-gap states which are not observed in experiment. Nevertheless, the combination of theoretical and experimental scanning tunneling microscopy images allowed the unambiguous identification of the vacancy defect.

EPFL2017