In Situ Biostimulation of Cr(VI) Reduction in a Fast-Flowing Oxic Aquifer

Hexavalent chromium is among the most common and hazardous inorganic contaminants in soils and groundwater. A promising in situ bioremediation approach is the delivery of electron donors to stimulate microbially mediated Cr(VI) reduction, producing relatively insoluble Cr(III) precipitates. Even though this strategy has been implemented successfully in the past, it was primarily under favorable hydrological conditions, such as relatively slow groundwater flow velocities. To evaluate whether microbially mediated Cr(VI) reduction can be sustained at high groundwater flow velocities and under nearly oxygen-saturated conditions, we have conducted laboratory-scale column experiments and a field-scale pilot study using molasses as the electron donor. Despite the unfavorable conditions, both experiments provided clear evidence for microbially mediated Cr(VI) reduction. In particular, the well used for injection in the field experiment became anoxic after two months of injection and the Cr(VI) concentration decreased by a factor of six. After stopping the injection, these conditions prevailed for at least four months. In the column experiments, Cr(VI) reduction was accompanied by distinct Cr isotopic fractionation characterized by an enrichment factor of -1.25 parts per thousand. In contrast, Cr isotope data collected from the field experiment were ambiguous, which was because of the complexation of Cr(III) with organic carbon and the heterogeneous distribution of molasses due to the presence of narrow preferential flow paths. A substantial injectivity decrease likely caused by the formation of biofilm and the precipitation of Fe sulfides formed an additional challenge during the field experiment. Our data, however, also suggest that most of the identified challenges could be addressed by limiting the targeted dissolved organic carbon concentrations to about 10 mg/L. In conclusion, the injection of molasses constitutes a promising bioremediation strategy for the long-term treatment of Cr(VI) contamination even at high flow rates and under oxic conditions.

Utilization of silicate minerals for pH control during in situ bioremediation of chlorinated solvent

David Andrew Barry, Alessandro Brovelli, Christof Holliger, Elsa Marina Lacroix

Chloroethenes such as tetrachloroethene (PCE) and trichloroethene (TCE) are among the most prevalent contaminants in groundwater due to their extensive use in industrial processes. In situ bioremediation (ISB) is an attractive technology for removal of these compounds. It relies on an anaerobic process in which specialized bacteria obtain energy for growth using chloroethenes as an electron acceptor via organohalide respiration. Engineered bioremediation is achieved by stimulating these microorganisms through the addition of electron donor in the subsurface. This technology has been widely used for bioremediation of chloroethene plumes and recent studies have indicated promising results for bioremediation of chlorinated solvent source zones. However, application of source zone ISB is still a significant technical challenge. One of the main issues is the groundwater acidification due to organohalide respiration and fermentation processes, which can inhibit the activity of dehalogenating micro-organisms. The main objective of this work was to develop an efficient pH control strategy for chloroethene ISB by using the acid neutralizing potential of silicate minerals. To do so, modeling and experimental approaches were combined. A geochemical model, implemented within PHREEQC, was developed to select appropriate buffer candidates and to help determine main parameters influencing mineral buffering capacity. The model included chloroethene microbial degradation kinetics, mineral dissolution kinetics and chemical speciation. Second, anaerobic microcosm experiments were performed to determine the influence of pH on dehalogenation. These microcosms were inoculated with enriched consortia of dehalogenating bacteria and fed with PCE and hydrogen. Another set of microcosm experiments was carried out to compare the buffering capacity of ten silicate minerals and to investigate interactions between minerals and dehalogenating bacteria, e.g., the potential inhibitory effect of minerals on the dehalogenating activity. These microcosms were amended with 5 mmol l-1 of PCE and 4 g l-1 of mineral with grain sizes between 50 and 100 μm. The cultivation medium was modified such that the silicate mineral powder was the sole pH buffer present. Chloroethenes, pH and dissolved cation measurements were conducted to determine the system efficiency. Abiotic dissolution experiments were also performed to determine mineral dissolution rates in the absence of bacteria. The model confirmed that the efficiency of the system is dependent mainly on mineral dissolution kinetic constants, equilibrium constants and reactive surface area. The geochemical model and literature parameter data were used to pre-select minerals with a buffering capacity sufficient to counterbalance acidity produced by dehalogenating bacteria at a rate of 4 mmol l-1.d-1of chloride. Of the 31 silicate minerals for which there were published kinetic data, 10 were identified as suitable candidates. The inhibitory pH for the dehalogenating consortia was found to vary between 5 and 6. The last steps of the dechlorination from DCE to ethene were more sensitive to pH than the first steps from PCE to DCE, as has been noted in other dechlorination studies. Results of microcosm experiments with silicate minerals demonstrated that, under the selected conditions, the pH control behavior and the impact on bacterial activity exhibited strong variations depending on the mineral. Of the ten minerals tested experimentally, three (olivine, fayalite and diopside) maintained the pH in the appropriate range, i.e., between 5.5 and 6.5 and led to complete transformation of PCE. For the other minerals tested, either the acid neutralization capacity was insufficient due to slow dissolution kinetics (glaucophane and staurolite) or dechlorination activity was inhibited by (unmeasured) compounds released during mineral dissolution. Both modeling and experimental results demonstrated the feasibility of using selected silicate minerals as a buffering agent during ISB. However, the experimental results also revealed a mineral-induced potential inhibitory effect that should be investigated prior to application at a contaminated site.

2011

Assessing the Bacterial Ecology of Organohalide Respiration for the Design of Bioremediation Strategies

Noam Shani

Groundwater is essential for human activities and is sometimes referred to as a non-renewable resource in the same way as oil and gas. During the past century, precious groundwater reserves worldwide have been threatened by anthropogenic release of chemical compounds. Among these, chlorinated ethenes (CEs) such as tetrachloroethene (PCE) and trichloroethene (TCE) belong to the most common class of groundwater contaminants. In oxic conditions, PCE and TCE are recalcitrant to any form of degradation and constitute a long-term source of groundwater contamination. It has been reported that CEs can be degraded biologically in anoxic conditions, serving as electron acceptors of an anaerobic respiratory process called organohalide respiration (OHR). In this process, PCE is sequentially reduced to TCE, cis-dichloroethene (cDCE), vinyl chloride (VC), and finally to harmless ethene (Eth). Engineering strategies based on reductive dechlorination, such as monitored natural attenuation (MNA), have been designed for the bioremediation of aquifers contaminated with CEs. However, stalling of the sequence of dechlorination has often been observed, resulting from incomplete or impeded biodegradation of the highly toxic daughter molecules (cDCE and VC) and leading to their accumulation in situ. It was shown in laboratory experiments that OHR of CEs is more efficient in mixed cultures and that organohalide-respiring bacteria (OHRB) live in association with other microorganisms in microbial consortia. In the aquifer ecosystem, OHRB rely on complex interactions between members of bacterial communities for their electron donors and carbon supplies. On the other hand, they are in competition for these resources with other terminal electron-accepting processes (TEAPs). These complex interactions together with the intrinsic structural heterogeneity of aquifers make it difficult to understand the reasons for lower CEs accumulation, to predict the fate of OHR, and to design bioremediation strategies. This thesis aimed at elucidating the reasons for lower CEs accumulation in situ. An ecological approach considering the aquifer ecosystem in its whole complexity was developed and applied to the specific cases of two contaminated sites showing accumulation of lower CEs. The proposed methodology relies on the precise depiction of both aquifer habitat and microbial communities interacting therein. However, the potential impact of the first technical step, namely the impact of the pumping parameters on groundwater samples used for the description of the bacterial communities, was not known at the start of this thesis work. Results of investigations addressing this topic showed that parameters related to the tubing characteristics did not impact the apparent bacterial community structures (BCS) in a laboratory experiment. However, the study revealed a significant impact of the pumping flow rate on apparent BCS extracted from the aquifer. Terminal-restriction fragment length polymorphism (T-RFLP), coupled with an appropriate groundwater sampling strategy, enabled an accurate profiling of the BCS. However no indication was provided concerning the identities of the community members. A bioinformatics tool called PyroTRF-ID was developed to overcome this obstacle. The software enabled affiliating terminal-restriction fragments (T-RFs) to precise phylotypes by coupling T-RFLP and pyrosequencing data. An additional function enables in silico assessment of restriction enzymes for designing appropriate T-RFLP procedures. The developed methodology was applied all along the thesis work. Optimized tools and procedures were used to investigate the reasons for the accumulation of VC, and to a lesser extent cDCE, in the first aquifer showing relatively homogeneous lithological composition and slow groundwater fluxes. Statistical findings indicated that VC reduction was outcompeted by Fe(III) reduction in some sections of the aquifer. T-RFs showing significant correlations with VC reduction variables were identified by sequencing and with PyroTRF-ID. Results showed sequences closely affiliated to uncultured bacteria of the "Lahn Cluster" (LC) within the class Dehalococcoidetes, previously reported as PCE-to-cDCE dechlorinating microorganisms, and to the genus "Dehalococcoides". According to present knowledge, only members of this genus are able to reduce cDCE and VC. A major T-RF negatively correlated with the LC T-RF affiliated to the genus Rhodoferax, containing iron-reducing bacteria (IRB). Furthermore, indications were obtained of a mutualistic interaction between IRB and sulfate-reducing bacteria, potentially playing an important role by reducing the Fe(III) contents locally. The importance of the aquifer hydrogeological structure and functioning was exemplified in the study of the second aquifer ecosystem, where discrepancies in the fate of OHR were observed. In the immediate vicinity of the source zone, complete OHR was occurring, with production of Eth, whereas cDCE was accumulating further downstream, in apparent similar redox conditions. The profiling and metagenomic techniques revealed drastically different bacterial communities in the zones displaying different OHR fate. The source zone displayed bacterial populations typically found in highly reduced environments and involved in OHR, such as Dehalococcoides sp. In contrast, the downstream zone showing an accumulation of cDCE displayed bacterial populations typically found in more oxidized environments, such as aerobic bacteria, nitrifiers, and denitrifiers. In this zone, the conditions were probably slightly oxidized periodically by the combination of aquifer recharge, a specific lithological configuration, and lower organic matter content. Finally, and based on these considerations, a methodology for the investigation of the reasons for lower CEs accumulation in contaminated aquifers is proposed and discussed. This methodology follows on a multidisciplinary ecological approach for the description of the functioning of the aquifer ecosystem, and enables formulating scenarii of the reasons for lower CEs accumulation.

EPFL2012

H2-fuelled microbial metabolism in Opalinus Clay

Rizlan Bernier-Latmani, Aislinn Ann Boylan, Niels Burzan, Luca Loreggian, Carla Perez Mon

In Switzerland, the Opalinus Clay formation is considered the most likely host rock for a deep geological repository for nuclear waste. In deep geological repositories, H2 is expected to be the most abundant gas formed from the degradation of waste and from metal corrosion. The microbial community present in Opalinus Clay is capable of utilizing H2 as an electron donor and sulfate as an electron acceptor to produce hydrogen sulfide. This could be problematic due to its potential for increasing the corrosion of metal waste canisters containing radioactive waste, however, the possible impacts of these processes on the clay rock have not been fully investigated. In this study, a series of microcosm experiments were set-up containing Opalinus Clay and porewater from the Mont Terri underground research laboratory (Switzerland) as an inoculum. Uninoculated microcosms were established to investigate abiotic processes. In the presence of clay, a higher aqueous sulfate concentration was detected than in those with only porewater present and this concentration decreased over time in the inoculated experiments. However, there was no evidence of hydrogen sulfide production in the aqueous phase. In all experiments with clay, there was an increase in aqueous Fe2+ concentrations with the highest concentrations found in uninoculated experiments. The sulfur speciation of the Opalinus Clay was analysed and the results of the inoculated sample suggested that hydrogen sulfide reacted with Fe2+, precipitating iron sulfide minerals. After the incubation period, the microbial community was dominated by the sulfate-reducing Desulfobulbaceae family. The study suggests that H2-fuelled, microbially-mediated sulfate reduction can affect the mineral composition within the Opalinus Clay due to the precipitation of iron sulfide minerals. These precipitation reactions may enhance the long-term integrity of the repository by removing corrosive hydrogen sulfide from solution when sufficient Fe2+ is available and so protecting the canisters containing the nuclear waste.

2019