Luminescent, porous, metal-organic crystals: Design, synthesis, and applications

The work presented in this thesis is focused on the design and discovery of new luminescent, porous, crystalline materials for targeted applications. In particular, we focus on luminescent Metal-Organic Frameworks (MOFs) and Organic Molecules of Intrinsic Microporosity (OMIMs), both belonging to emerging classes of synthetic materials that are particularly promising due to their porosity, modularity, and the many dynamic photophysical processes that can be exploited within them. While there is great potential for these types of materials, their relatively recent discovery, less than two decades prior to the writing of this thesis, means that they are still in early stages of development and so very few examples exist that demonstrate the potential for real-world applicability. Challenges persist in achieving targeted design, high stability, or processing for integration into devices. The aim of this thesis is consider new ways of strategically designing MOFs and OMIMs that may be carried a step closer to real-world application. With problems like excess energy consumption and the depletion of clean air and water supplies on the rise in todayâs world, applications that can have a positive impact on the environment are of particular interest. We present a luminescent MOF that is capable of detecting trace amounts of fluoride contaminations in drinking water down to the parts per billion (ppb) range. The interactions of this MOF with fluoride in aqueous solutions are simultaneously electrostatic and specific in nature because of the carefully designed structure of its active site. This allows the material to be easily regenerated and used over 10 cycles, setting it apart from most existing molecular and polymeric fluoride sensors. We combined our MOF with a portable prototype sampling device that was designed and built in-house to measure fluoride concentrations in natural groundwater samples taken from three different countries, with the results showing excellent agreement with ion chromatography analysis. The strategy that we use to obtain this reversible yet selective interaction can be applied to the design of new MOFs that work on a similar principle. In addition, we present a new OMIM that exhibits broad spectrum, tuneable white light emission. The structural components and pore environment of the OMIM contribute to it having a high quantum yield in addition to tuneability that can be controlled by guest molecules. Using this material, we obtain the highest thus-far reported value of photoluminescence quantum yield for a single-species white-light emitter, with a nearly pure-white emission colour. This has promising implications for the fabrication of new, energy-efficient Organic Light-Emitting Diode (OLED) devices. In addition, introducing structural changes to the base ligand of this OMIM will allow us to obtain a greater range of colour tuneability as well as new features of guest-host chemistry.

Geometric landscapes for material discovery within energy–structure–function maps

Seyedmohamad Moosavi, Berend Smit, Henglu Xu

Porous molecular crystals are an emerging class of porous materials formed by crystallisation of molecules with weak intermolecular interactions, which distinguishes them from extended nanoporous materials like metal–organic frameworks (MOFs). To aid discovery of porous molecular crystals for desired applications, energy–structure–function (ESF) maps were developed that combine a priori prediction of both the crystal structure and its functional properties. However, it is a challenge to represent the high-dimensional structural and functional landscapes of an ESF map and to identify energetically favourable and functionally interesting polymorphs among the 1000s to 10 000s of structures typically on a single ESF map. Here, we introduce geometric landscapes, a representation for ESF maps based on geometric similarity, quantified by persistent homology. We show that this representation allows the exploration of complex ESF maps, automatically pinpointing interesting crystalline phases available to the molecule. Furthermore, we show that geometric landscapes can serve as an accountable descriptor for porous materials to predict their performance for gas adsorption applications. A machine learning model trained using this geometric similarity could reach a remarkable accuracy in predicting the materials' performance for methane storage applications.

2020

Design of Surface-Supported Bio-inspired Networks for CO2 and O2 Activation at Room Temperature

Daniel Eduardo Hurtado Salinas

The structure of a biological system defines its function. Therefore, nature has developed sophisticated systems that catalyze chemical reactions that are vital for life on earth. For instance, the photosynthesis is a biological process that is partially regulated by the metallo-enzyme RuBisCO (Ribulose-1,5-bisphosphate carboxylase/oxygenase), whose function is to catalyze the capture and transfer of CO2 into organic molecules. This carboxylation reaction occurs at the active site, where a magnesium ion (Mg2+) is bound to organic molecules with carboxylate (COO-) and amine (NH2) functional groups. In the last decades, supramolecular chemistry has proven to be a valid approach to replicate the structural characteristics of these natural metal-organic systems. Metal atoms and organic molecules are used as building blocks to form two-dimensional (2D) metal-organic networks (MONs) on metal surfaces, through a self-assembly process that occurs spontaneously. In these systems the molecules bind to the metal centers and control their oxidation states that, as found in metallo-enzymes, is crucial to perform a catalytic task. Therefore, these supramolecular assemblies show promising features to be explored for heterogeneous catalysis. The main objective of this thesis is to reverse the structure-function equation, that is: instead of finding specific functions of well-known 2D structures for future applications, 2D structures are designed to reproduce the specific functions of well-known bio-systems. Thus, inspired in the structure of the active site of RuBisCO, 2D Mg-based supramolecular assemblies are rationally designed on Cu(100) or Mg(0001) surfaces at room temperature (RT) as a platform for CO2 adsorption. This work is the first study of self-assembly of alkaline earth metal atoms (Mg) with organic molecules ((1,4-benzenedicarboxylic acid (TPA) and 2,4,6-tris(4-aminophenyl)-1,3,5-triazine (TAPT)) on metal surfaces. The first part of this thesis investigates the self-assembly of TAPT molecules. Scanning Tunneling Microscopy (STM) and High Resolution X-ray Photoemission Spectroscopy (HR-XPS) demonstrate that the molecules typically semi-deprotonate to form MONs with the adatoms from the host substrates. The exposure of these structures to CO2 results in the carboxylation of the amino groups. The second part proves that the COOH moieties of TPA molecules fully-deprotonate to form homo-molecular structures. The incorporation of Mg adatoms result in ionic MONs, which reproduce the carboxylate environment of the active site of RuBiSCO. STM, XPS and Density Functional Theory (DFT) analyze the structural changes, the chemical reactions and charge transfer during either the CO2 or O2 adsorption on the Mg2+ centers. The last part focusses on the co-deposition of both molecules to form 2D metallic-hetero-molecular networks with Mg2+ centers. The role of the Mg2+ centers as active sites for molecular adsorption and model systems for gas storage is studied. STM reveals that CO2 partially modifies the network towards a configuration that resembles the active site of RuBisCO. The formation of 3D structures to enhance CO2 adsorption is also evaluated.

EPFL2018

Synthesis, Characterization, and Applications of Visible Light Active Metal-Organic Frameworks

Samantha Lynn Anderson

Understanding how crystalline materials are assembled is important for the rational design of metal-organic frameworks (MOFs). Controlling their formation can allow researchers to streamline the synthesis of new materials as well as control their properties for targeted applications. In the first chapter of this thesis we report the construction of two 3-dimensional TbIII based MOFs (SION-1 and SION-2). Here, SION-2 acts as a metastable MOF and intermediate phase that partially dissolves and transforms into the thermodynamically stable MOF, SION-1. This chemical transformation occurs in a DMF/water solvent mixture, and is triggered when additional energy is provided to the reaction. In situ studies reveal the partial dissolution of the metastable phase after which the MOF components are reassembled into the thermodynamically stable phase. The marked difference in thermal and chemical stability between the kinetically and thermodynamically controlled phases is contrasted by their identical chemical building unit composition. Following the understanding of this transformation, an isostructural family of SION-1 and SION-2 had been constructed using lanthanide metal salts, where LnIII-SION-1 is comprised of Ce, Nd, Eu, Gd, Tb, Dy, Ho, Er, Yb and Lu and LnIII-SION-2 is formed using Ce, Nd, Eu, Gd, Tb and Yb. The electronic properties of lanthanide based MOFs have not been extensively studied due to the general cognizance that LnIII ions behave as isolated free ions as their 4f orbitals do not contribute to bonding. Here, we systematically studied the electronic properties (UV-vis) of LnIII-SION-1 and LnIII-SION-2 and show that the higher the intensity of this absorption band in LnIII-SION-1 is due to the better overlap between Ln(5d) and ligand(pi*) orbitals and reveals that the lowest unoccupied crystalline orbitals are dispersed over an energy range and can be considered as a conduction band. We validated this observation by the non-linear I-V curves collected on CeIII- and YbIII-SION-1, both of which display dielectric properties. In the second chapter of this thesis, we rationally design a novel biologically derived MOF featuring unobstructed Watson-Crick faces of Ade pointing towards the MOF cavities. We show, through a combined experimental and computational approach, that Thy molecules diffuse through the pores of the MOF and become base-paired with Ade. The Ade-Thy pair binding at 40-45% loading reveals that Thy molecules are packed within the channels in a way that fulfill both the Woodward-Hoffmann and Schmidt rules, and upon UV irradiation, Thy molecules dimerize into ThyThy. This study highlights the utility of MOFs as nanoreactors for the synthesis of molecules that are otherwise difficult. Concluding this thesis, a biologically derived multimodal sensor MOF is synthesized and a formed into a device. The MOF, SION-9, is comprised of Ade and a porphyrin based ligand, and has tuneable conductive properties ranged from 2.69-4.20 x 10-8 - 7.43-7.34 x 10-6 S/cm. SION-9 is sensitive to both pressure and temperature simultaneously, and demonstrated both fast response times (< 60 ms) and a long shelf life (> 6 months).