Publication

3D Structure From 2D Microscopy Images Using Deep Learning

Related publications (44)

Microsecond Time-Resolved Cryo-Electron Microscopy

Recently, single-particle cryo-electron microscopy emerged as a technique capable of determining protein structures at near-atomic resolution and resolving protein dynamics with a temporal resolution ranging from second to milliseconds. This thesis describ ...

EPFL2024

, , , , , , , , ,

Cell segmentation is a critical step for quantitative single-cell analysis in microscopy images. Existing cell segmentation methods are often tailored to specific modalities or require manual interventions to specify hyper-parameters in different experimen ...

Nature Portfolio2024

A new age in protein design empowered by deep learning

Bruno Emanuel Ferreira De Sousa Correia, Michael Bronstein, Hamed Khakzad, Casper Alexander Goverde, Arne Schneuing, Ilia Igashov

The rapid progress in the field of deep learning has had a significant impact on protein design. Deep learning methods have recently produced a breakthrough in protein structure prediction, leading to the availability of high-quality models for millions of ...

Cambridge2023

Artificial intelligence, particularly the subfield of machine learning, has seen a paradigm shift towards data-driven models that learn from and adapt to data. This has resulted in unprecedented advancements in various domains such as natural language proc ...

EPFL2023

Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics

Hamed Khakzad

Author summaryIn recent years, the application of deep learning represented a breakthrough in the mass spectrometry (MS) field by improving the assignment of the correct sequence of amino acids from observable MS spectra without prior knowledge, also known ...

PUBLIC LIBRARY SCIENCE2023

Text Representation Learning for Low Cost Natural Language Understanding

Jan Frederik Jonas Florian Mai

Natural language processing and other artificial intelligence fields have witnessed impressive progress over the past decade. Although some of this progress is due to algorithmic advances in deep learning, the majority has arguably been enabled by scaling ...

EPFL2023

Deep Learning Generalization with Limited and Noisy Labels

Mahsa Forouzesh

Deep neural networks have become ubiquitous in today's technological landscape, finding their way in a vast array of applications. Deep supervised learning, which relies on large labeled datasets, has been particularly successful in areas such as image cla ...

EPFL2023

Multi-agent Reinforcement Learning for Assembly of a Spanning Structure

Gabriel Rémi Vallat

In this master thesis, multi-agent reinforcement learning is used to teach robots to build a self-supporting structure connecting two points. To accomplish this task, a physics simulator is first designed using linear programming. Then, the task of buildin ...

2023

3D reconstruction of curvilinear one-dimensional objects viewed in transmission electron microscopy

Gulnaz Ganeeva

To obtain a more complete understanding of material microstructure at the nanoscale and to gain profound insights into their properties, there is a growing need for more efficient and precise methods that can streamline the process of 3D imaging using a tr ...

EPFL2023

Trusting the Explainers: Teacher Validation of Explainable Artificial Intelligence for Course Design

Vinitra Swamy, Mirko Marras, Sijia Du

Deep learning models for learning analytics have become increasingly popular over the last few years; however, these approaches are still not widely adopted in real-world settings, likely due to a lack of trust and transparency. In this paper, we tackle th ...

2023

Graph Chatbot

Chat with Graph Search

Ask any question about EPFL courses, lectures, exercises, research, news, etc. or try the example questions below.

DISCLAIMER: The Graph Chatbot is not programmed to provide explicit or categorical answers to your questions. Rather, it transforms your questions into API requests that are distributed across the various IT services officially administered by EPFL. Its purpose is solely to collect and recommend relevant references to content that you can explore to help you answer your questions.