The regiochemically flexible functionalization of fluoro-and trifluoromethyl-substituted indoles

The use of organometallic reagents for functionalization of arenes and heterocycles has recently been renewed by our group. The use of bulky trialkylsilyl groups allows one to shield an acidic position by steric hindrance and the introduction of a chlorine atom permits the activation of the nearby site. The organometallic methods were applied to fluorinated indoles, taking into account the growing attention toward halogen as a key factor for improving drug activity. Only few commercial fluoroindoles are inexpensive. Therefore it was necessary to find a method allowing an efficient preparation of the staring material. Many methods have been developed to synthesize halogenated indoles. The more common ways implies electrophilic cyclization. Once obtained the starting material, all four fluoroindoles were subjected to exhaustive functionalization by organometallic reagents, using either bromine/metal permutation or direct metalation in conjunction with chlorine or triisopropylsilyl residues as protecting groups. Once protected position 2 by steric shielding, the metalation occurs at the position next to the fluorine. In the case of 4 and 7-fluoroindoles there is no ambiguity, but for the 4 and 6 isomers we were obliged to play with bases in order to achieve a good regioselectivity. The use of chlorine was necessary to reach the meta position to the fluorine. Only a few derivatives of fluoroindoles are known in literature. However one could expect such compounds to be versatile building blocks for the synthesis of biologically active compound, due to the presence of fluorine or trifluoromethyl group, helping to fine-tune the lipophilicity of a molecule or to protect against metabolic oxidation. This thesis work aimed to fill the gaps in this field by elaborating methods to efficiently and easily prepare functionalized derivatives of fluoroindoles and in particular all twelve possible regioisomeric fluoroindole carboxylic acids.

Endeavors in synthetically oriented organometallic chemistry

Giuseppe Mangano

This thesis work aimed to show the potentialities of the organometallic approach and, in particular, the organoalkali one, in Organic Synthesis (whose possibilities cannot be underestimated). A wide opening on the big landscape of possibilities has been reached by the study of functionalization of minimally acidic hydrocarbons with the Schlosser LICKOR superbase. This has allowed selective functionalization of a biphenylic system with different functional groups and the preparation of molecules of interest in catalysis. The study of the organometallic approach in organic synthesis continued with the functionalization of the virtually "no-cost" substrate 1-fluoronaphthalene with a big variety of functional groups like phosphinic, aldehydic, carboxylic, halides etc.. This preliminary study was useful in order to develop a strategy in the preparation of binaphthylic systems, obtained by a method that uses copper (II) as an arene coupling agent. This method was developed in the laboratories of Prof. Schlosser's Group and gave good results in the preparation of molecules that can be used as ligands in Asymmetric Catalysis. A complementary study was done on the possibility of using chloride as a protecting group in metalation to have also access to the functionalization of 1-fluoronaphthalene in positions different from the 2-position derived from an ortho-metalation. The preparation of hydrazines using organoalkali reagents was the other target studied because hydrazines are useful starting materials for Pharmaceuticals. A preliminary study was done using the addition of organolithium reagents to azobisformamides. At the end, after the encouraging results obtained, an unexpected result was obtained on the reactivity of azobisformamides. Pyrazoles are an important class of heterocycles, widely used as drugs for the therapy of various diseases. In particular, the trifluoromethylpyrazoles are a class of substances that show some activity as antiinflammatory drugs or as selective insecticides. The organometallic approach in preparation and functionalization of these substrates again showed its power.

EPFL2004

Synthesis of Alkynylated Heterocycles by Direct C-H Alkynylation or Domino Alkynylation Reactions

Yifan Li

Heterocycles are important compounds in organic chemistry. To introduce functional groups on heterocycles or synthesize functionalized heterocycles stays a hot topic of research. Among all the functional groups, alkynes attracted a lot of attention not only because of their occurrence in organic compounds, like synthetic pharmaceuticals, natural products and organic materials, but also because of their versatile chemistry, such as metal catalyzed cyclization and [3+2] annulation reactions. Therefore, it is of great importance to introduce alkynes on heterocycles or synthesize alkynylated heterocycles in an efficient and regioselective manner. The Sonogashira reaction has dominated the introduction of alkynes on heterocycles. Even though the method is well established, there are several shortcomings such as stoichiometric waste production and poor stability or accessibility of the starting materials. To introduce alkynes on heterocycles in an efficient fashion, direct C-H alkynylation has been intensiely investigated as an alternative in the last decades. Based on the previous work in our group, direct C-H alkynylation was extended to access C2- alkynylated furans using a gold catalyst and triisopropylsilyl ethynyl benziodoxolone (TIPS-EBX). For less nucleophilic substrates like benzofurans, the use of Zn(OTf)2 was necessary to activate the EBX reagent. Although direct C-H alkynylation provides a straightforward way to access alkynylated heterocycles, it is limited to the inherently more reactive positions such as the C2 position of five-membered heterocycles or the heterocyclic ring of benzofused heterocycles. It is therefore challenging to find pathways to obtain heterocycles functionalized at other positions. Domino reactions could provide a solution to this challenge, as the metal-carbon bond could be installed on positions different from the ones obtained via a direct metallation approach. Based on this concept, unprecedented cyclization-alkynylation domino reactions were developed to access alkynylated heterocycles. Starting from easily prepared allenic ketones or ortho- ethynylated phenols or thioanisoles, C3 alkynylated furans, benzofurans and benzothiophenes can be rapidly accessed. This is a breakthrough as it allows for the introduction of alkynes on less nucleophilic positions. These products are difficult to obtain via direct C-H alkynylation as it occurred exclusively on C2 position of furans, benzofurans and benzothiophenes. Nevertheless, this approach was still limited to more reactive heterocycles. We then turned our efforts to develop domino reactions to functionalize the less reactive benzene ring. We found that with C2 or C3-substituted pyrroles as starting materials, C5 or C6 alkynylated indoles can be easily formed when combining a platinum catalyst with a bistrifluoromethyl benziodoxole reagent. In summary, a series of alkynylated heterocycles were obtained via direct alkynylation or domino reactions combining hypervalent iodine reagents and metal catalysts. This discovery is expected to find broad application to access diverse alkynylated heterocycles. It also set the bases for the development of new domino processes with different metal catalysts and electrophilic reagents in the future.

EPFL2016

Endeavors in synthetically oriented organometallic chemistry

Giuseppe Mangano

EPFL2004

Synthesis of Alkynylated Heterocycles by Direct C-H Alkynylation or Domino Alkynylation Reactions

Yifan Li

EPFL2016