A flexible motif search technique based on generalized profiles
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Linear Gaussian State-Space Models are widely used and a Bayesian treatment of parameters is therefore of considerable interest. The approximate Variational Bayesian method applied to these models is an attractive approach, used successfully in application ...
Contextual information is important for sequence modeling. Hidden Markov Models (HMMs) and extensions, which have been widely used for sequence modeling, make simplifying, often unrealistic assumptions on the conditional independence of observations given ...
Linear Gaussian State-Space Models are widely used and a Bayesian treatment of parameters is therefore of considerable interest. The approximate Variational Bayesian method applied to these models is an attractive approach, used successfully in application ...
Contextual information is important for sequence modeling. Hidden Markov Models (HMMs) and extensions, which have been widely used for sequence modeling, make simplifying, often unrealistic assumptions on the conditional independence of observations given ...
In this paper, we present an HMM2 based method for speaker normalization. Introduced as an extension of Hidden Markov Model (HMM), HMM2 differentiates itself from the regular HMM in terms of the emission density modeling, which is done by a set of state-de ...
In this paper, we present an HMM2 based method for speaker normalization. Introduced as an extension of Hidden Markov Model (HMM), HMM2 differentiates itself from the regular HMM in terms of the emission density modeling, which is done by a set of state-de ...
Pattern matching combined with regular expressions has many applications including text and XML processing, lexical analysis, classification of DNA segments and content-based routing. Patterns contain variables to refer to parts of the matching input. But ...
MOTIVATION: We describe APDB, a novel measure for evaluating the quality of a protein sequence alignment, given two or more PDB structures. This evaluation does not require a reference alignment or a structure superposition. APDB is designed to efficiently ...
MOTIVATION: InterPro is a new integrated documentation resource for protein families, domains and functional sites, developed initially as a means of rationalising the complementary efforts of the PROSITE, PRINTS, Pfam and ProDom database projects. RESULTS ...
Accurate prediction of transcription factor binding sites is needed to unravel the function and regulation of genes discovered in genome sequencing projects. To evaluate current computer prediction tools, we have begun a systematic study of the sequence-sp ...
