Publications related to Efficient multidimensional free energy calculations for ab initio molecular dynamics using classical bias potentials

Random sampling of bandlimited signals on graphs

Pierre Vandergheynst, Rémi Gribonval, Gilles Puy, Nicolas Tremblay

We study the problem of sampling

k

-bandlimited signals on graphs. We propose two sampling strategies that consist in selecting a small subset of nodes at random. The first strategy is non-adaptive, \ie, independent of the graph structure, and its perform ...

2015

Measuring the relative effect of factors affecting species distribution model predictions

Anthony Christopher Davison, Emeric Rolland Georges Thibaud

Species distribution models are increasingly used to address conservation questions, so their predictive capacity requires careful evaluation. Previous studies have shown how individual factors used in model construction can affect prediction. Although som ...

Wiley-Blackwell2014

Metropolis-Hastings sampling of paths

Michel Bierlaire, Gunnar Flötteröd

We consider the previously unsolved problem of sampling paths according to a given distribution from a general network. The problem is difficult because of the combinatorial number of alternatives, which prohibits a complete enumeration of all paths and he ...

2013

Adaptive conformational sampling based on replicas

Jérémy Curuksu

Computer simulations of biomolecules such as molecular dynamics simulations are limited by the time scale of conformational rearrangements. Several sampling techniques are available to search the multi-minima free energy landscape but most efficient, time- ...

Springer-Verlag2012

Samplinghelper a web-based tool to assess the reliability of sampling strategies in sewers and receiving waters

David Andrew Barry, Luca Rossi, Nathalie Chèvre Rossi

Sampling is a key step in the analysis of chemical compounds. It is particularly important in the environmental field, for example for wastewater effluents, wet-weather discharges or streams in which the flows and concentrations vary greatly over time. In ...

IWA Publishing2011

Metropolis-Hastings sampling of paths

Michel Bierlaire, Gunnar Flötteröd

We consider the previously unsolved problem of sampling paths according to a given distribution from a general network. The problem is difficult because of the combinatorial number of alternatives, which prohibits a complete enumeration of all paths and he ...

2011

Metropolis-Hastings sampling of paths

Michel Bierlaire, Gunnar Flötteröd

We consider the previously unsolved problem of sampling paths according to a given distribution from a general network. The problem is difficult because of the combinatorial number of alternatives, which prohibits a complete enumeration of all paths and he ...

2011

Metropolis-Hastings sampling of paths

Michel Bierlaire, Gunnar Flötteröd

We consider the previously unsolved problem of sampling cycle-free paths according to a given distribution from a general network. The problem is difficult because of the combinatorial number of alternatives, which prohibits a complete enumeration of all p ...

2011

Frequency domain compensation of spurious sidebands in A/D circuits

Ali H. Sayed

In a non-ideal PLL circuit, leakage of the reference signal into the control line produces spurious tones. When the distorted PLL signal is used as a clock signal, it creates spurious tones in the sampled data. Our prior work used a training signal to esti ...

IEEE2011

Group Testing with Probabilistic Tests: Theory, Design and Application

Martin Vetterli, Amin Karbasi, Ali Hormati, Mahdi Cheraghchi Bashi Astaneh

Identification of defective members of large populations has been widely studied in the statistics community under the name of group testing. It involves grouping subsets of items into different pools and detecting defective members based on the set of tes ...

Institute of Electrical and Electronics Engineers2011

Efficient multidimensional free energy calculations for ab initio molecular dynamics using classical bias potentials

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Random sampling of bandlimited signals on graphs

Measuring the relative effect of factors affecting species distribution model predictions

Metropolis-Hastings sampling of paths

Adaptive conformational sampling based on replicas

Samplinghelper a web-based tool to assess the reliability of sampling strategies in sewers and receiving waters

Metropolis-Hastings sampling of paths

Metropolis-Hastings sampling of paths

Metropolis-Hastings sampling of paths

Frequency domain compensation of spurious sidebands in A/D circuits

Group Testing with Probabilistic Tests: Theory, Design and Application

Measuring the relative effect of factors affecting species distribution model predictions

Random sampling of bandlimited signals on graphs

Metropolis-Hastings sampling of paths

Adaptive conformational sampling based on replicas

Samplinghelper a web-based tool to assess the reliability of sampling strategies in sewers and receiving waters

Metropolis-Hastings sampling of paths

Metropolis-Hastings sampling of paths

Metropolis-Hastings sampling of paths

Group Testing with Probabilistic Tests: Theory, Design and Application

Frequency domain compensation of spurious sidebands in A/D circuits