Molecular cloningMolecular cloning is a set of experimental methods in molecular biology that are used to assemble recombinant DNA molecules and to direct their replication within host organisms. The use of the word cloning refers to the fact that the method involves the replication of one molecule to produce a population of cells with identical DNA molecules. Molecular cloning generally uses DNA sequences from two different organisms: the species that is the source of the DNA to be cloned, and the species that will serve as the living host for replication of the recombinant DNA.
Cloning vectorA cloning vector is a small piece of DNA that can be stably maintained in an organism, and into which a foreign DNA fragment can be inserted for cloning purposes. The cloning vector may be DNA taken from a virus, the cell of a higher organism, or it may be the plasmid of a bacterium. The vector contains features that allow for the convenient insertion of a DNA fragment into the vector or its removal from the vector, for example through the presence of restriction sites.
Restriction enzymeA restriction enzyme, restriction endonuclease, REase, ENase or restrictase is an enzyme that cleaves DNA into fragments at or near specific recognition sites within molecules known as restriction sites. Restriction enzymes are one class of the broader endonuclease group of enzymes. Restriction enzymes are commonly classified into five types, which differ in their structure and whether they cut their DNA substrate at their recognition site, or if the recognition and cleavage sites are separate from one another.
Library (biology)In molecular biology, a library is a collection of DNA fragments that is stored and propagated in a population of micro-organisms through the process of molecular cloning. There are different types of DNA libraries, including cDNA libraries (formed from reverse-transcribed RNA), genomic libraries (formed from genomic DNA) and randomized mutant libraries (formed by de novo gene synthesis where alternative nucleotides or codons are incorporated).
Sequence alignmentIn bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences. Aligned sequences of nucleotide or amino acid residues are typically represented as rows within a matrix. Gaps are inserted between the residues so that identical or similar characters are aligned in successive columns.
Spectral sequenceIn homological algebra and algebraic topology, a spectral sequence is a means of computing homology groups by taking successive approximations. Spectral sequences are a generalization of exact sequences, and since their introduction by , they have become important computational tools, particularly in algebraic topology, algebraic geometry and homological algebra. Motivated by problems in algebraic topology, Jean Leray introduced the notion of a sheaf and found himself faced with the problem of computing sheaf cohomology.
Derived functorIn mathematics, certain functors may be derived to obtain other functors closely related to the original ones. This operation, while fairly abstract, unifies a number of constructions throughout mathematics. It was noted in various quite different settings that a short exact sequence often gives rise to a "long exact sequence". The concept of derived functors explains and clarifies many of these observations. Suppose we are given a covariant left exact functor F : A → B between two A and B.
Derived categoryIn mathematics, the derived category D(A) of an A is a construction of homological algebra introduced to refine and in a certain sense to simplify the theory of derived functors defined on A. The construction proceeds on the basis that the of D(A) should be chain complexes in A, with two such chain complexes considered isomorphic when there is a chain map that induces an isomorphism on the level of homology of the chain complexes. Derived functors can then be defined for chain complexes, refining the concept of hypercohomology.
Protein sequencingProtein sequencing is the practical process of determining the amino acid sequence of all or part of a protein or peptide. This may serve to identify the protein or characterize its post-translational modifications. Typically, partial sequencing of a protein provides sufficient information (one or more sequence tags) to identify it with reference to databases of protein sequences derived from the conceptual translation of genes. The two major direct methods of protein sequencing are mass spectrometry and Edman degradation using a protein sequenator (sequencer).
Exact sequenceAn exact sequence is a sequence of morphisms between objects (for example, groups, rings, modules, and, more generally, objects of an ) such that the of one morphism equals the kernel of the next. In the context of group theory, a sequence of groups and group homomorphisms is said to be exact at if . The sequence is called exact if it is exact at each for all , i.e., if the image of each homomorphism is equal to the kernel of the next. The sequence of groups and homomorphisms may be either finite or infinite.
