Publications associées à Classification phylogénétique

Bootstrapping phylogenies inferred from rearrangement data

Background: Large-scale sequencing of genomes has enabled the inference of phylogenies based on the evolution of genomic architecture, under such events as rearrangements, duplications, and losses. Many evolutionary models and associated algorithms have be ...

BioMed Central2012

A metric for phylogenetic trees based on matching

Bernard Moret, Yu Lin, Vaibhav Rajan

Comparing two or more phylogenetic trees is a fundamental task in computational biology. The simplest outcome of such a comparison is a pairwise measure of similarity, dissimilarity, or distance. A large number of such measures have been proposed, but so t ...

Springer Verlag2011

The perils of taxonomic inconsistency in quantitative palaeoecology: experiments with testate amoeba data

Edward Mitchell, Mariusz Lamentowicz

A fundamental requirement of quantitative palaeoecology is consistent taxonomy between a modern training set and palaeoecological data. In this study we assess the possible consequences of violation of this requirement by simulating taxonomic errors in tes ...

2011

Does Positive Selection Drive Transcription Factor Binding Site Turnover? A Test with Drosophila Cis-Regulatory Modules

Sebastian Maerkl

Transcription factor binding site(s) (TFBS) gain and loss (i.e., turnover) is a well-documented feature of cis-regulatory module (CRM) evolution, yet little attention has been paid to the evolutionary force(s) driving this turnover process. The predominant ...

Public Library of Science2011

Comparing COI and SSU rDNA barcodes for assessing the diversity and phylogenetic relationships of cyphoderiid testate amoebae (Rhizaria: Euglyphida)

Edward Mitchell, Enrique Lara, Thierry Jean Heger

The mitochondrial Cytochrome Oxidase Subunit 1 gene (COI) has been promoted as an ideal “DNA barcode” for animal species and other groups of eukaryotes. However, the utility of the COI marker for species level discrimination and for phylogenetic analyses h ...

2011

Numerical Ecology with R

François Gillet, Daniel Borcard

Numerical Ecology with R provides a long-awaited bridge between a textbook in Numerical Ecology and the implementation of this discipline in the R language. After short theoretical overviews, the authors accompany the users through the exploration of the m ...

Springer2011

Fast and accurate phylogenetic reconstruction from high-resolution whole-genome data and a novel robustness estimator

Bernard Moret, Yu Lin, Vaibhav Rajan

The rapid accumulation of whole-genome data has renewed interest in the study of genomic rearrangements. Comparative genomics, evolutionary biology, and cancer research all require models and algorithms to elucidate the mechanisms, history, and consequence ...

2011

Bootstrapping phylogenies inferred from rearrangement data

Bernard Moret, Yu Lin, Vaibhav Rajan

Large-scale sequencing of genomes has enabled the inference of phylogenies based on the evolution of genomic architecture, under such events as rearrangements, duplications, and losses. Many evolutionary models and associated algorithms have been designed ...

Springer Verlag2011

A Unique Skeletal Microstructure of the Deep-Sea Micrabaciid Scleractinian Corals

Anders Meibom, Jaroslaw Hubert Stolarski

Micrabaciids are solitary, exclusively azooxanthellate deep-sea corals belonging to one of the deepest-living (up to 5,000 m) scleractinian representatives. All modern micrabaciid taxa (genera: Letepsammia, Rhombopsammia, Stephanophyllia, Leptopenus) have ...

2011

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Classification phylogénétique

Bootstrapping phylogenies inferred from rearrangement data

A metric for phylogenetic trees based on matching

Transcriptional Regulatory Networks across Species

The perils of taxonomic inconsistency in quantitative palaeoecology: experiments with testate amoeba data

Does Positive Selection Drive Transcription Factor Binding Site Turnover? A Test with Drosophila Cis-Regulatory Modules

Comparing COI and SSU rDNA barcodes for assessing the diversity and phylogenetic relationships of cyphoderiid testate amoebae (Rhizaria: Euglyphida)

Numerical Ecology with R

Fast and accurate phylogenetic reconstruction from high-resolution whole-genome data and a novel robustness estimator

Bootstrapping phylogenies inferred from rearrangement data

A Unique Skeletal Microstructure of the Deep-Sea Micrabaciid Scleractinian Corals

Graph Chatbot

Chattez avec Graph Search

Comparing COI and SSU rDNA barcodes for assessing the diversity and phylogenetic relationships of cyphoderiid testate amoebae (Rhizaria: Euglyphida)

Bootstrapping phylogenies inferred from rearrangement data

A Unique Skeletal Microstructure of the Deep-Sea Micrabaciid Scleractinian Corals

Fast and accurate phylogenetic reconstruction from high-resolution whole-genome data and a novel robustness estimator

Numerical Ecology with R

A metric for phylogenetic trees based on matching

Does Positive Selection Drive Transcription Factor Binding Site Turnover? A Test with Drosophila Cis-Regulatory Modules

The perils of taxonomic inconsistency in quantitative palaeoecology: experiments with testate amoeba data

Bootstrapping phylogenies inferred from rearrangement data

Transcriptional Regulatory Networks across Species