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Publications associées (22)

Environment rather than breed or body site shapes the skin bacterial community of healthy sheep as revealed by metabarcoding

Christof Holliger, Alexander Mathis, Emmanuelle Rohrbach, Laetitia Janine Andrée Cardona

Background: The skin is inhabited by a variety of micro-organisms, with bacteria representing the predominant taxon of the skin microbiome. In sheep, the skin bacterial community of healthy animals has been addressed in few studies, only with culture-based ...

2023

Performance of traditional nomadic yurts for living in extremes

Dolaana Khovalyg, Arnab Chatterjee

A round felt yurt is a traditional dwelling of Central Asian nomads that have survived over 2000 years. The structure and the use of the yurt have not changed over the centuries, making it a nomadic civilization's masterpiece. It has not lost its relevance ...

2021

Rapid identification and interpretation of gene‐environment associations using the new R.SamBada landscape genomics pipeline

Stéphane Joost, Oliver Michele Selmoni, Estelle Rochat, Sylvie Stucki, Kevin Leempoel, Elia Vajana

Samβada is a genome‐environment association (GEA) software, designed to search for signatures of local adaptation. However, pre‐ and post‐processing of data can be labour‐intensive, preventing wider uptake of the method. We have now developed R.SamBada, an ...

2019

Signatures of selection and environmental adaptation across the goat genome post-domestication

Stéphane Joost, Estelle Rochat

Background: Since goat was domesticated 10,000 years ago, many factors have contributed to the differentiation of goat breeds and these are classified mainly into two types: (i) adaptation to different breeding systems and/or purposes and (ii) adaptation t ...

BMC2018

Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Stéphane Joost, Estelle Rochat, Elia Vajana

Background: Goat populations that are characterized within the AdaptMap project cover a large part of the worldwide distribution of this species and provide the opportunity to assess their diversity at a global scale. We analysed genome-wide 50K single nuc ...

BMC2018

Multi locus genotypic data reveal high genetic diversity and low genetic structure of Iranian sheep

Stéphane Joost

Iranian livestock diversity is still largely unexplored, in spite of the interest in the populations historically reared in this country located near the Fertile Crescent, a major livestock domestication centre. In this investigation, the genetic diversity ...

Wiley-Blackwell2016

Optimizing Carbon Storage Within a Spatially Heterogeneous Upland Grassland Through Sheep Grazing Management

Charlotte Vandenberghe

Livestock grazing is known to influence carbon (C) storage in vegetation and soil. Yet, for grazing management to be used to optimize C storage, large scale investigations that take into account the typically heterogeneous distribution of grazers and C acr ...

Springer2014

Genome-wide patterns of adaptation to climate-mediated selective pressures in sheep

Stéphane Joost, Sylvie Stucki

Sheep (Ovis aries) have been well adapted to thrive in a diverse range of climates during the domestication and breed development process. These climate-mediated selective pressures have shown to influence phenotypic variation within and among breeds and, ...

2014

Investigation of genetic diversity of domestic C. hircus breeds reared within an early goat domestication area in Iran

Stéphane Joost

Iran is an area of particular interest for investigating goat diversity. Archaeological remains indicate early goat domestication (about 10 000 years ago) in the Iranian Zagros Mountains as well as in the high Euphrates valley and southeastern Anatolia. In ...

EDP Sciences2014

Assessing the spatial dependence of adaptive loci in 43 European and Western Asian goat breeds using AFLP markers

Stéphane Joost

Background During the past decades, neutral DNA markers have been extensively employed to study demography, population genetics and structure in livestock, but less interest has been devoted to the evaluation of livestock adaptive potential through the ide ...

Public Library of Science2014

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