Phase (thermodynamique) | EPFL Graph Search

thumb|right|Un système composé d'eau et d'huile, à l'équilibre, est composé de deux phases distinctes (biphasique). En thermodynamique, on utilise la notion de phase pour distinguer les différents états possibles d'un système. Selon le contexte et les auteurs, le mot est utilisé pour désigner plusieurs choses, parfois de natures différentes, mais étroitement liées. Si un système thermodynamique est entièrement homogène, physiquement et chimiquement, on dit qu'il constitue une seule phase. Dans le cas contraire, on appelle phases ses parties homogènes. La décomposition d'un système en différentes phases peut évoluer au gré des transformations que le système subit. De manière générale, le processus par lequel un système ou une de ses parties se transforme d'une phase à une autre est appelé transition de phase. Par extension, on utilise aussi le terme de phase pour désigner le domaine d'existence ou de stabilité d'une parcelle donnée dans l'espace des paramètres thermodynamiques. Cett

Magnetism and metal-organic self-assembly of rare-earth atoms on decoupling layers

Sébastien Reynaud

This thesis presents investigations of magnetic and structural properties of two dimensional metal-organic frameworks and of single atoms, both adsorbed on decoupling layers grown on metal surfaces, with focus on rare earth elements.We first report on a series of attempts at realizing self-assembled metal-organic networks on different decoupling layers, probed by scanning tunneling microscopy. The aim is to produce regular structures with high surface filling factors such that the magnetic properties of the rare earth atoms in the metal-organic networks can be investigated by X-ray ensemble measurements. The combinations of three molecular ligands (QDC, BDA, ZnTPyP) on three insulating layers (MgO, NaCl, graphene) with Tb as rare earth are reported. Of the three decoupling layers, only graphene is found to allow the synthesis of metal-organic structures. We successfully synthesized large islands of a rare earth-QDC coordination complex, with a majority of fivefold coordination of the rare earth atoms. The same structure is reproduced with Dy and Er.X-ray absorption spectroscopy, X-ray magnetic circular and linear dichroism measurements are then carried out on the Dy- and Er-QDC/gr/Ir(111) networks. Compared to single atoms on gr/Ir(111), both Dy and Er change their

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and change their easy axis of magnetization. Both species are paramagnetic when incorporated into the metal-organic structure. The last part of the thesis is devoted to the study of Dy, Ho, and Gd on NaCl thin films. All three atoms display

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occupancy of the gas phase. The top-Cl adsorption site is determined with scanning tunneling microscopy. The magnetic properties are probed with X-ray absorption spectroscopy, X-ray magnetic circular and linear dichroism. Ho and Gd are paramagnetic. Dy has out-of-plane anisotropy with open hysteresis at non zero magnetic field. However, thermally assisted quantum tunneling of the magnetization prevents remanence at zero field.

EPFL2022

Characterization and prediction of peptide structures on inorganic surfaces

Dmitrii Maksimov

Interfaces between peptides and metallic surfaces are the subject of great interest for possible use in technological and medicinal applications, mainly since organic systems present an extensive range of functionalities, are abundant, cheap, and exhibit low toxicity. Exemplary applications are biosensors that may be sensitive to specific metabolites or harmful compounds. However, these hybrid interfaces pose a challenge to computational modelling, particularly regarding predicting the most relevant configurations at the surface, which determines the electronic properties of the system as a whole. From a theoretical point of view, predicting the most stable interface configuration requires searching through the enormous structure space of flexible biomolecules with respect to the surface for different configurations and performing computational calculations of their properties. However, it is impossible to investigate those parts separately due to complex interactions during adsorption. In order to capture these complex interactions, one has to employ accurate theoretical methods, which are very computationally expensive. In this thesis, we provide a comprehensive description of the complex nature of the interaction of selected amino acids with metallic surfaces using state-of-the-art dimensionality reduction techniques and accurate ab initio theoretical methods and creation of tools tailored for the high-throughput investigations of interface systems. The theoretical methods used in the thesis are described in the first part of the thesis. The second section looks into the conformational space changes of Arginine (Arg) and its protonated counterpart after adsorption on three noble metallic surfaces. Arg is an excellent testbed because it is tiny enough to be treated using density functional theory, which is considered the best compromise between accuracy and computational efficiency. At the same time, Arg is complex enough due to a highly flexible side-chain that allows for hundreds of different configurations in the gas phase alone. The examination of adsorption behavior requires creating a database by performing a large number of geometry optimizations of various conformations and orientations. The investigation of that database includes creating a low-dimensional representation of the conformational spaces using recent dimensionality reduction techniques, followed by examining various bonding and charge transfer patterns and how they affect the available conformational spaces.The third section of the thesis is concerned with developing tools for the automated structure search of interface systems and the modelling of self-assembly patterns formed after adsorption. Different geometry optimization algorithms and a flexible method of preconditioning the quasi-Newton optimization algorithms are implemented in the GenSec package that was developed. Together, these enable a more straightforward interface with a wide range of quantum chemistry packages for sampling the conformational spaces of flexible molecules in 1D (ions), 2D (surfaces), and 3D (cavities and molecules) systems. Structure search of the conformational space of a flexible molecule using GenSec provided satisfactory results for di-L-alanine adsorbed on Cu(110) surface.

EPFL2022

Impact of water activity on the mineralogy of hydrated cement

Luis Guillermo Baquerizo Ibarra

Cement hydrates and their chemically bound water content are sensitive to changes in relative humidity (RH) and temperature. This may cause specific solid volume changes affecting dimensional properties of hydrated cement paste such as shrinkage, swelling and expansion, and therefore impact the performance and the transport properties of cementitious materials. The present thesis studies the impact of drying conditions on the structure and thermodynamic properties of crystalline cement hydrates in different hydration states (i.e. varying molar water contents). The cement hydrates studied include the most important AFm and AFt phases present in different types of cements. A novel multi method approach, including XRD, TGA, DSC, sorption balance measurements, sorption calorimetry and the hydrate pair ¿ humidity buffer method, was used to derive physico-chemical boundary conditions and the thermodynamic properties of the studied hydrated phases. The stability and hydration states of AFm phases depend on the anion content and the exposure conditions. Some phases such as monosulfoaluminate and hydroxy-AFm are very sensitive to different relative humidities. On the other hand monocarboaluminate and strätlingite present very good volume stability with varying RH. Ettringite shows a strong hysteresis during desorption/adsorption, and the thermodynamic properties associated with its decomposition and reformation were determined. The experimental results were included into a thermodynamic model capable of predicting the response of cementitious systems considering the ¿true¿ crystal water content on the final phase assemblage in two different scenarios: i) during hydration, even at conditions where the amount of water added was insufficient for complete hydration, and ii) during drying and re-wetting processes in already hydrated systems. Our work hence opens the possibility to model the response of various cement materials exposed to different climatic conditions and to engineer cementitious systems with respect to minimizing volume changes in the course of drying, which may positively impact properties like drying shrinkage and total porosity.

EPFL2015

Impact of water activity on the mineralogy of hydrated cement

Luis Guillermo Baquerizo Ibarra

EPFL2015

Characterization and prediction of peptide structures on inorganic surfaces

Dmitrii Maksimov

EPFL2022

Magnetism and metal-organic self-assembly of rare-earth atoms on decoupling layers

Sébastien Reynaud

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occupancy from 4

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EPFL2022