Concept
Phylogénie
Publications associées (119)
Taxonomic characterisation of Pseudomonas strain L48 and formal proposal of Pseudomonas entomophila sp nov.
An entomopathogenic, Gram-negative bacterium isolated from a female specimen of the fruit fly Drosophila melanogaster was taxonomically characterised. Strain L48(T) was strictly aerobic, non-fermentative, oxidase and catalase positive, rod-shaped, and moti ...
Elsevier2012TIBA: a tool for phylogeny inference from rearrangement data with bootstrap analysis
Bernard Moret, Yu Lin, Vaibhav Rajan
TIBA is a tool to reconstruct phylogenetic trees from rearrangement data that consist of ordered lists of synteny blocks (or genes), where each synteny block is shared with all of its homologues in the input genomes. The evolution of these synteny blocks, ...
Oxford University Press2012Fast and accurate phylogenetic reconstruction from high-resolution whole-genome data and a novel robustness estimator
Bernard Moret, Yu Lin, Vaibhav Rajan
The rapid accumulation of whole-genome data has renewed interest in the study of genomic rearrangements. Comparative genomics, evolutionary biology, and cancer research all require models and algorithms to elucidate the mechanisms, history, and consequence ...
2011Bootstrapping phylogenies inferred from rearrangement data
Bernard Moret, Yu Lin, Vaibhav Rajan
Large-scale sequencing of genomes has enabled the inference of phylogenies based on the evolution of genomic architecture, under such events as rearrangements, duplications, and losses. Many evolutionary models and associated algorithms have been designed ...
Springer Verlag2011Comparing COI and SSU rDNA barcodes for assessing the diversity and phylogenetic relationships of cyphoderiid testate amoebae (Rhizaria: Euglyphida)
Edward Mitchell, Enrique Lara, Thierry Jean Heger
The mitochondrial Cytochrome Oxidase Subunit 1 gene (COI) has been promoted as an ideal “DNA barcode” for animal species and other groups of eukaryotes. However, the utility of the COI marker for species level discrimination and for phylogenetic analyses h ...
2011Transcriptional Regulatory Networks across Species
The determination of transcriptional regulatory networks is key to the understanding of biological systems. However, the experimental determination of transcriptional regulatory networks in the laboratory remains difficult and time-consuming, while current ...
EPFL2011A metric for phylogenetic trees based on matching
Bernard Moret, Yu Lin, Vaibhav Rajan
Comparing two or more phylogenetic trees is a fundamental task in computational biology. The simplest outcome of such a comparison is a pairwise measure of similarity, dissimilarity, or distance. A large number of such measures have been proposed, but so t ...
Springer Verlag2011Identification of Scarabaeus micans Drury and taxonomic notes on Dicronorhina Hope, with description of a new species (Coleoptera, Scarabaeidae, Cetoniinae)
The complex of Dicronorhina Hope taxa without cretaceous marks on head and body (“micans group”) is here diagnosed, discussed and revised. The type species of the genus, Scarabaeus micans Drury, 1773, is identified and re-described. D. johnstoni Waterhouse ...
2011Numerical Ecology with R
François Gillet, Daniel Borcard
Numerical Ecology with R provides a long-awaited bridge between a textbook in Numerical Ecology and the implementation of this discipline in the R language. After short theoretical overviews, the authors accompany the users through the exploration of the m ...
Springer2011Analysis of Co-evolving Gene Families Using Mutually Exclusive Orthologous Modules
Coevolutionary networks can encapsulate information about the dynamics of presence and absence of gene families in organisms. Analysis of such networks should reveal fundamental principles underlying the evolution of cellular systems and the functionality ...
2011