Matrix isolation is an experimental technique used in chemistry and physics. It generally involves a material being trapped within an unreactive matrix. A host matrix is a continuous solid phase in which guest particles (atoms, molecules, ions, etc.) are embedded. The guest is said to be isolated within the host matrix. Initially the term matrix-isolation was used to describe the placing of a chemical species in any unreactive material, often polymers or resins, but more recently has referred specifically to gases in low-temperature solids. A typical matrix isolation experiment involves a guest sample being diluted in the gas phase with the host material, usually a noble gas or nitrogen. This mixture is then deposited on a window that is cooled to below the melting point of the host gas. The sample may then be studied using various spectroscopic procedures. The transparent window, on to which the sample is deposited, is usually cooled using a compressed helium or similar refrigerant. Experiments must be performed under a high vacuum to prevent contaminants from unwanted gases freezing to the cold window. Lower temperatures are preferred, due to the improved rigidity and "glassiness" of the matrix material. Noble gases such as argon are used not just because of their unreactivity but also because of their broad optical transparency in the solid state. Mono-atomic gases have relatively simple face-centered cubic (fcc) crystal structure, which can make interpretations of the site occupancy and crystal-field splitting of the guest easier. In some cases a reactive material, for example, methane, hydrogen or ammonia, may be used as the host material so that the reaction of the host with the guest species may be studied. Using the matrix isolation technique, short-lived, highly-reactive species such as radical ions and reaction intermediates may be observed and identified by spectroscopic means. For example, the solid noble gas krypton can be used to form an inert matrix within which a reactive F3− ion can sit in chemical isolation.

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