MétabolomeThe metabolome refers to the complete set of small-molecule chemicals found within a biological sample. The biological sample can be a cell, a cellular organelle, an organ, a tissue, a tissue extract, a biofluid or an entire organism. The small molecule chemicals found in a given metabolome may include both endogenous metabolites that are naturally produced by an organism (such as amino acids, organic acids, nucleic acids, fatty acids, amines, sugars, vitamins, co-factors, pigments, antibiotics, etc.
Mycoplasma laboratoriumMycoplasma laboratorium serait la première espèce de bactérie de synthèse, dérivée du génome de Mycoplasma genitalium qui présente 517 gènes et qui a donc été allégée d'un quart de ses gènes soit le minimum nécessaire à sa survie en conditions de laboratoire. Un chromosome de synthèse a été créé par une équipe d'une vingtaine de scientifiques dirigée par le chercheur Craig Venter et le prix Nobel de médecine Hamilton Smith. Le chromosome contient une séquence génétique de 381 gènes sur 580.000 paires de base.
Conservation geneticsConservation genetics is an interdisciplinary subfield of population genetics that aims to understand the dynamics of genes in a population for the purpose of natural resource management and extinction prevention. Researchers involved in conservation genetics come from a variety of fields including population genetics, natural resources, molecular ecology, biology, evolutionary biology, and systematics. Genetic diversity is one of the three fundamental measures of biodiversity (along with species diversity and ecosystem diversity), so it is an important consideration in the wider field of conservation biology.
Single-molecule real-time sequencingSingle-molecule real-time (SMRT) sequencing is a parallelized single molecule DNA sequencing method. Single-molecule real-time sequencing utilizes a zero-mode waveguide (ZMW). A single DNA polymerase enzyme is affixed at the bottom of a ZMW with a single molecule of DNA as a template. The ZMW is a structure that creates an illuminated observation volume that is small enough to observe only a single nucleotide of DNA being incorporated by DNA polymerase. Each of the four DNA bases is attached to one of four different fluorescent dyes.
Population genomicsPopulation genomics is the large-scale comparison of DNA sequences of populations. Population genomics is a neologism that is associated with population genetics. Population genomics studies genome-wide effects to improve our understanding of microevolution so that we may learn the phylogenetic history and demography of a population. Population genomics has been of interest to scientists since Darwin. Some of the first methods used for studying genetic variability at multiple loci included gel electrophoresis and restriction enzyme mapping.
AffymetrixAffymetrix est une entreprise américaine basée à Santa Clara en Californie, fabriquant des puces à ADN. La technologie a été mise au point dans les années 1980 par une équipe de scientifiques. Après avoir été une division de Affimax en 1991, elle prend le nom de Affymetrix en 1992. En 2008 elle a racheté Panomics, Inc., True Materials Inc. Elle a réalisé un chiffre d'affaires de 327 millions de dollars en 2009. En , Thermo Fisher annonce l'acquisition d'Affymetrix, spécialisée dans l'analyse génétique, pour 1,3 milliard de dollars.
Exome sequencingExome sequencing, also known as whole exome sequencing (WES), is a genomic technique for sequencing all of the protein-coding regions of genes in a genome (known as the exome). It consists of two steps: the first step is to select only the subset of DNA that encodes proteins. These regions are known as exons—humans have about 180,000 exons, constituting about 1% of the human genome, or approximately 30 million base pairs. The second step is to sequence the exonic DNA using any high-throughput DNA sequencing technology.
Sanger sequencingSanger sequencing is a method of DNA sequencing that involves electrophoresis and is based on the random incorporation of chain-terminating dideoxynucleotides by DNA polymerase during in vitro DNA replication. After first being developed by Frederick Sanger and colleagues in 1977, it became the most widely used sequencing method for approximately 40 years. It was first commercialized by Applied Biosystems in 1986. More recently, higher volume Sanger sequencing has been replaced by next generation sequencing methods, especially for large-scale, automated genome analyses.
Molecular epidemiologyMolecular epidemiology is a branch of epidemiology and medical science that focuses on the contribution of potential genetic and environmental risk factors, identified at the molecular level, to the etiology, distribution and prevention of disease within families and across populations. This field has emerged from the integration of molecular biology into traditional epidemiological research. Molecular epidemiology improves our understanding of the pathogenesis of disease by identifying specific pathways, molecules and genes that influence the risk of developing disease.
Structural alignmentStructural alignment attempts to establish homology between two or more polymer structures based on their shape and three-dimensional conformation. This process is usually applied to protein tertiary structures but can also be used for large RNA molecules. In contrast to simple structural superposition, where at least some equivalent residues of the two structures are known, structural alignment requires no a priori knowledge of equivalent positions.
