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This paper proposes a new point of view in analyzing the optimal Gibbs energy dissipation in growing microorganisms. Small Gibbs energy dissipation in growth would be of biological advantage because less resource is consumed and the biomass yield on these ...
Fractionation of isotopes among distinct molecules or phases is a quantum effect which is often exploited to obtain insights on reaction mechanisms, biochemical, geochemical, and atmospheric phenomena. Accurate evaluation of isotope ratios in atomistic sim ...
Many complex networks erase parts of their geometry as they develop, so that their evolution is difficult to quantify and trace. Here we introduce entropy measures for quantifying the complexity of street orientations and length variations within planar ne ...
The morphology of street patterns has been the subject of many studies in recent decades. While some have noted the textural and morphological differences in various parts of many cities, there have been few attempts to quantify the street patterns that co ...
Nowadays, most software and hardware applications are committed to reduce the footprint and resource usage of data. In this general context, lossless data compression is a beneficial technique that encodes information using fewer (or at most equal number o ...
In this paper, the 'Approximate Message Passing' (AMP) algorithm, initially developed for compressed sensing of signals under i.i.d. Gaussian measurement matrices, has been extended to a multi-terminal setting (MAMP algorithm). It has been shown that simil ...
There have been many studies on the spatial configuration of cities, but few attempts to quantify the difference in building patterns between the old and new parts of cities. This may be partly attributable to lack of suitable study methods. This paper pre ...
Dynamic nonlinear models of metabolism offer a significant advantage as compared to constraint-based stoichiometric descriptions. However, progress in the development of large-scale nonlinear models has been hindered by both structural and quantitative unc ...
Abstract—In this paper, the ‘Approximate Message Passing’ (AMP) algorithm, initially developed for compressed sensing of signals under i.i.d. Gaussian measurement matrices, has been extended to a multi-terminal setting (MAMP algorithm). It has been shown t ...
DNA supercoiling plays a role in genetic control by imposing torsional stress. This can induce writhe, which changes the global shape of the DNA. We have used atomistic molecular dynamics simulations to partition the free energy changes driving the writhin ...