Publications de Kyle Gustafson

Differential regulation of RNA polymerase III genes during liver regeneration

Olivier Martin, Bart Deplancke, Felix Naef, Jacques Rougemont, Marion Leleu, Nicolas Jean Philippe Guex, Fabrice David, Kyle Gustafson, Dominic Villeneuve, Cristian Carmeli

Mouse liver regeneration after partial hepatectomy involves cells in the remaining tissue synchronously entering the cell division cycle. We have used this system and H3K4me3, Pol II and Pol III profiling to characterize adaptations in Pol III transcriptio ...

Oxford University Press (OUP)2019

Clock-dependent chromatin topology modulates circadian transcription and behavior

Felix Naef, Cédric Gobet, Kyle Gustafson, Frédéric Bruno Martin Gachon, Jake Yeung, Daniel Alain Dominique Marie Mauvoisin, Damien Lionel Nicolas, Jérôme Mermet, Celine Jouffe, Clémence Yumie Syloun Hurni

Cold Spring Harbor Laboratory Press2018

Non-diffusive transport of suprathermal ions by intermittent turbulent structures

Ambrogio Fasoli, Ivo Furno, Paolo Ricci, Kyle Gustafson, Alexandre Dominique Bovet

We report on recent experimental, numerical and theoretical investigations of suprathermal ion transport and turbulent plasma dynamics in TORPEX. TORPEX is a toroidal device in which field-aligned blobs are intermittently generated and propagate across a c ...

2016

Superdiffusive transport in laboratory and astrophysical plasmas

Ambrogio Fasoli, Ivo Furno, Paolo Ricci, Kyle Gustafson, Alexandre Dominique Bovet

In the last few years it has been demonstrated, both by data analysis and by numerical simulations, that the transport of energetic particles in the presence of magnetic turbulence can be superdiffusive rather than normal diffusive (Gaussian). The term ‘su ...

Cambridge University Press2015

Nondiffusive transport regimes for suprathermal ions in turbulent plasmas

Ambrogio Fasoli, Ivo Furno, Paolo Ricci, Kyle Gustafson, Alexandre Dominique Bovet

The understanding of the transport of suprathermal ions in the presence of turbulence is important for fusion plasmas in the burning regime that will characterize reactors, and for space plasmas to understand the physics of particle acceleration. Here, thr ...

Amer Physical Soc2015

Plasma turbulence, suprathermal ion dynamics and code validation on the basic plasma physics device TORPEX

Ambrogio Fasoli, Ivo Furno, Paolo Ricci, Benoît Labit, Christian Gabriel Theiler, Joaquim Loizu Cisquella, Mario Ludovico Podesta, Fabio Avino, Francesca Maria Poli, Gennady Plyushchev

The TORPEX basic plasma physics device at the Center for Plasma Physics Research (CRPP) in Lausanne, Switzerland is described. In TORPEX, simple magnetized toroidal configurations, a paradigm for the tokamak scrape-off layer (SOL), as well as more complex ...

Cambridge University Press2015

Fluctuation-driven neural dynamics reproduce Drosophila locomotor patterns

Dario Floreano, Pavan P Ramdya, Kyle Gustafson, Andrea Maesani

The neural mechanisms determining the timing of even simple actions, such as when to walk or rest, are largely mysterious. One intriguing, but untested, hypothesis posits a role for ongoing activity fluctuations in neurons of central action selection circu ...

2015

Transport equation describing fractional Lévy motion of suprathermal ions in TORPEX

Ambrogio Fasoli, Ivo Furno, Paolo Ricci, Kyle Gustafson, Alexandre Dominique Bovet, Matteo Gamarino

Suprathermal ions, created by fusion reactions or by additional heating, will play an important role in burning plasmas such as the ones in ITER or DEMO. Basic plasma experiments, with easy access for diagnostics and well-controlled plasma scenarios, are p ...

IOP Publishing Ltd2014

Characteristic bimodal profiles of RNA polymerase II at thousands of active mammalian promoters

Felix Naef, Cédric Gobet, Kyle Gustafson, Mathieu Quinodoz

Background: In mammals, ChIP-seq studies of RNA polymerase II (PolII) occupancy have been performed to reveal how recruitment, initiation and pausing of PolII may control transcription rates, but the focus is rarely on obtaining finely resolved profiles th ...

BioMed Central2014

Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells

Felix Naef, Cédric Gobet, Kyle Gustafson, Jonathan Bieler, Rosamaria Cannavo

Circadian cycles and cell cycles are two fundamental periodic processes with a period in the range of 1 day. Consequently, coupling between such cycles can lead to synchronization. Here, we estimated the mutual interactions between the two oscillators by t ...

Nature / European Molecular Biology Organization2014