Personne
Anastasia Sveshnikova
Publications associées (6)
Expanding computational biochemistry towards complex and non-natural compounds
In the beginning was the metabolism. The biochemical processes that make life possible transformed the soup of chemicals into the life on Earth we know today. Since then, living organisms have evolved, and life on Earth has become more complex. Living orga ...
EPFL2023Supplementary dataset for Enzyme promiscuous profiles for protein sequence and reaction annotation
Vassily Hatzimanikatis, Ljubisa Miskovic, Homa Mohammadi Peyhani, Anastasia Sveshnikova
The data and scripts used to produce, analyze, and visualize the results of the manuscript Enzyme promiscuous profiles for protein sequence and reaction annotation by Homa MohammadiPeyhani, Anastasia Sveshnikova, Ljubisa Miskovic, and Vassily Hatzimanikati ...
Zenodo2023Computational tools and resources for designing new pathways to small molecules
Vassily Hatzimanikatis, Anastasia Sveshnikova
The metabolic engineering community relies on computational methods for pathway design to produce important small molecules in microbial hosts. Metabolic network databases are continuously curated and updated with known and novel reactions that expand the ...
CURRENT BIOLOGY LTD2022Expanding biochemical knowledge and illuminating metabolic dark matter with ATLASx
Vassily Hatzimanikatis, Jasmin Maria Hafner, Anastasia Sveshnikova, Victor Luc Etienne Viterbo
Metabolic "dark matter" describes currently unknown metabolic processes, which form a blind spot in our general understanding of metabolism and slow down the development of biosynthetic cell factories and naturally derived pharmaceuticals. Mapping the dark ...
NATURE PORTFOLIO2022Supplementary datasets for "ARBRE: Computational resource to predict pathways towards industrially important aromatic compounds"
Vassily Hatzimanikatis, Homa Mohammadi Peyhani, Anastasia Sveshnikova
Supplementary datasets accompanying the manuscript "ARBRE: Computational resource to predict pathways towards industrially important aromatic compounds" published in the Metabolic Engineering Journal (https://doi.org/10.1016/j.ymben.2022.03.013). In line w ...
EPFL Infoscience2022Updated ATLAS of Biochemistry with New Metabolites and Improved Enzyme Prediction Power
Vassily Hatzimanikatis, Jasmin Maria Hafner, Anastasia Sveshnikova, Alan Scheidegger
The ATLAS of Biochemistry is a repository of both known and novel predicted biochemical reactions between biological compounds listed in the Kyoto Encyclopedia of Genes and Genomes (KEGG). ATLAS was originally compiled based on KEGG 2015, though the number ...
AMER CHEMICAL SOC2020