Functional Nanostructures Based on Organometallic Half-Sandwich Complexes

Hexanuclear coordination cages of the formula [(C5Me4R)M(C7H3NO 4)]6 (M = Rh, Ir; R = Me, H) were obtained by stepwise reaction of [(C5Me4R)M(μ-Cl)Cl]2 with, first AgOAc and then pyridine-3,5-dicarboxylic acid. Crystallographic analyses show that the cages adopt a distorted octahedral geometry with the pyridine-3,5-dicarboxylates functioning as dianionic bridging ligands, each of which connects three different (C5Me4R)M fragments. The cages act as exoreceptors for large alkali metal cations K+ and Cs+, as well as NH4+, but show low affinity for Na+. Crystallographic and NMR spectroscopic analyses indicate that two metal ions can be coordinated to the surface of the cages. The respective binding sites comprise three carbonyl O-atoms from the bridging pyridine-3,5-dicarboxylate ligands. Novel supramolecular architectures were obtained by reacting the dinuclear macrocycle [(cymene)Ru(μ-C12H12O4)(H 2O)]2 with different N-donor ligands. A tetranuclear assembly was obtained with 1,2-di(4-pyridyl)ethylene, whereas hexanuclear complexes were formed with 2,4,6-tris(4-pyridyl)triazine and 1,3,5-tris(4-pyridylethynyl)benzene. The reaction with 5,10,15,20-tetra(4-pyridyl)porphyrine, on the other hand gave tetra- or octanuclear complexes, depending on the stoichiometry that was employed. The 2,4,6-tris(4-pyridyl)triazine complex was shown to act as a host for polycyclic aromatic compounds such as pyrene, triphenylene and coronene. A hexanuclear coordination cage has been formed by self-assembly of three elongated [(cymene)Ru(μ-C14H10O6)] 2 dinuclear macrocycles and two equivalents of 2,4,6-tris(4-pyridyl)triazine. The twisted coordination prism with a height of 3.5 Å (bottom to top) could be untwined by addition of coronene to – for half-sandwich complex-based cages – unprecedented size of 10.8 Å (bottom to top). Crystallographic and NMR spectroscopic analyses indicate that two coronene molecules can be encapsulated inside this cage.

Self-assembly of organometallic macrocycles and cages

Thomas Brasey

Neutral metallamacrocycles with four or ten metal centers were obtained by reaction of [(R3P)PdCl2]2 with 2,3-dihydroxypyridine and derivatives or 2-hydroxynicotinic acid in the presence of base. In all these assemblies, the two O-donor atoms of the ligand bind to one metal center to form a chelate ring, while the N-donor atom binds to another metal center, linking the subunits together. The tetrameric complexes showed a low affinity for small aromatic diols. The procedure was adapted for the synthesis of water-soluble macrocycles: ligands which contain both the 2,3-dihydroxypyridine motive and a tertiary amine function that can be protonated were reacted in water with the acetato-bridged complex [(Et3P)Pd(CH3COO)2]2 to give tetrameric macrocycles in over 90% yields. Scrambling experiments showed that the Pd(II) macrocycles are highly inert. The reaction of ReBr3(CO)32 with 3-hydroxy-1,2,3-benzotriazine-4(3H)-one in the presence of base gave the ionic rhenium complex [ReBr(C7H4N3O2)(CO)3][NEt4], from which a neutral metallamacrocycle was obtained upon abstraction of (NEt4)Br. Its connectivity is comparable to that of the Pd(II) macrocycles. In coordinating solvents, this macrocycle disrupts and the monomeric solvent adducts are formed. In the presence of BF4-, it undergoes an anion-templated rearrangement to give a new, trimeric macrocycle which cocrystallizes with an unusual C3-symmetric [Ag(η2-benzene)3(OH2)][BF4] complex, the tetrafluoroborate anion being encapsulated in the cavity of the macrocycle. By reacting [(cymene)RuCl2]2 with 3,5-pyridinedicarboxylic acid, a trifunctional ligand in which the three donor atoms are unable to coordinate to the same metal center, an hexameric coordination cage was obtained. This complex has a trigonal antiprism geometry. Half of the carbonyl O-atoms of the bridging ligands are positioned in close proximity to each other, forming two binding sites on the surface. The cage can thus act as an exo-receptor for alkali metal cations (Na+, K+, Cs+). 1H and 13C NMR investigations as well as a single crystal X-ray analysis revealed that upon addition of alkali metal salts, the hexanuclear assembly partly rearranges to form a dodecameric coordination cage with icosahedral geometry. Although entropically disfavored, this process takes place because in this new complex all carbonyl O-atoms are part of a binding site (eight metal cations can be accommodated on the surface of the cage). Furthermore, due to the reduced surface curvature of the dodecanuclear assembly, these O-atoms are closer together, forming more suited binding sites for the alkali guest cations. To best of our knowledge, a coordination cage with an icosahedral geometry has not been reported so far.

EPFL2006

Low-dimensional supramolecular architectures at metal surfaces

Sebastian Stepanow

This thesis is concerned with supramolecular architectures assembled at metal surfaces. The investigations pursued two objectives. On the one hand, the focus was placed on the fabrication of low-dimensional surface-supported network structures by applying the concepts of conventional three-dimensional supramolecular chemistry at surfaces. Three main driving forces were explored for the construction of low-dimensional assemblies: hydrogen bonding, metal coordination and ionic interactions. The realized structures were characterized by scanning tunneling microscopy (STM) under ultra-high vacuum conditions. In particular, the interplay between the adsorbate-substrate coupling and lateral adsorbate interactions was addressed in the experiments. Further, the electronic and magnetic properties of the fabricated coordination structures were investigated. This characterization was done by x-ray absorption experiments at the synchrotron facility in Grenoble. Moreover, the response of the metal units and open cavity structures to the adsorption of large organic and small gas molecules was studied by temperature controlled STM experiments. The first part of the thesis deals with hydrogen bonded supramolecular assemblies. Simple aromatic carboxylic acids were employed to study the assembly principles and in particular effects arising from the substrate and molecular structure. The investigation of TPA (1,4-benzenedicarboxylic acid) adlayers on Cu(100) at different substrate temperatures revealed how the protonation status of the carboxyl moieties affects the topology of the assemblies. Further, the influence of the molecular backbone functionality and symmetry is addressed in comparative investigations on TPA and PDA (2,5-pyrazinedicarboxylic acid) as well as BDA (4,4'-biphenyldicarboxylic acid) and SDA (4',4" trans-ethene-l,2-diyl-bisbenzoic acid) adlayers on Cu(100). In the second part of the thesis, metal-ligand interactions were employed for the construction of supramolecular architectures at a Cu(100) surface. The concepts of conventional coordination chemistry were successfully applied at the surface. Iron atoms in conjunction with rod-like aromatic molecular linkers comprising carboxyl, pyridyl and hydroxyl functional groups assemble into a rich variety of open network structures with distinctly arranged mono- and diiron coordination centers and well-defined cavities. The results show that the adsorbate-substrate coupling considerably affects the local coordination environment of the iron units when the molecular backbone length is varied. The occurrence of structural isomerism in open network structures is addressed in a comparative study of heterofunctional and homofunctional linker molecules. It is shown that the former ligand allows only one topologically pure structure while the other linker forms two phases with different topology. The hydroxyl ligand has been used to construct distorted hexagonal coordination networks containing threefold coordinated single iron atoms. The comparison between the networks on Cu(100) and Ag(111) surfaces shows marked differences, which are attributed to adsorbate-substrate interactions. Finally, a novel design strategy for the fabrication of two-dimensional coordination structures at surfaces is introduced by using alkali metal ions in conjunction with carboxylate ligands. The interaction between the components is dominated by electrostatic forces and is of intermediate bond strength as in the case of hydrogen bonding and transition metal coordination. It is expected, that substrate symmetry and registry plays a larger role in the network formation, because the ionic interaction is not directional. The chemical as well as magnetic properties of the fabricated coordination networks are examined in the last part of the thesis. The adsorption of C60 molecules on open network structures reveals how cavity size and chemical functionality affect the bond strength to the guest molecules as well as the number of accommodated C60 molecules. Since transition metal clusters, and in particular diiron units, are the catalytic active centers in various proteins, the reactivity of various mono- and diiron coordination structures to molecular oxygen was investigated in temperature controlled STM experiments. In particular, the focus was placed on the structural relaxation upon gas adsorption and chemical reaction. At last, the magnetic properties of the metal coordination centers are addressed in XMCD experiments. The iron units are found to be paramagnetic at temperatures down to 5 K and show distinct magnetic anisotropy and magnetization loops. These experiments demonstrate that surface-supported metal coordination structures are a promising class of materials for applications in the field of heterogenous catalysis and surface magnetism.

EPFL2005

Enantiopure helical (supra)molecular arrays containing lanthanides

Marco Antonio Lama

The diastereoselective synthesis of chiral coordination compounds with d metals proved the effectiveness of the pinene-bipyridine approach in predetermining the chirality at the metal centre. The strong Lewis acidic character of lanthanide cations required the modification of this class of ligands in order to adapt their coordination properties to the binding affinity of Ln(III) toward hard donor atoms like oxygen. The pinene bipyridine carboxylic derivative (+)-L- (figure 1) has been designed and synthesized to form configurationally stable lanthanide complexes. This ligand proved its effectiveness as chiral building block for the synthesis of oligometallic supramolecular structures. Indeed a self-assembly process takes place with complete diastereoselectivity between the enantiomerically pure (-) or (+) L- and Ln(III) ions (Ln = La, Pr, Nd, Sm, Eu, Gd, Tb, Dy, Ho, Er) in methanol, giving rise to trinuclear enantiopure structures with general formula Ln3(L)6(µ3-OH)(H2O)32 , possessing predetermined helical chirality. The ligands in this case display a new version of supramolecular helical chirality since they are wrapping around a trimetallic core instead of one single metal centre. The same components afford a second polynuclear structure if the reaction is carried out in CH3CN. In this medium a three-dimensional tetranuclear array self-assembles (with general formula Ln4(L)9(µ3-OH)2). The nine ligands are forming three distinct helical domains, two supramolecular as in the case of the trinuclear array and one classical around a single metal centre, with predetermined configuration. The two classes of compounds have been structurally characterized in solid state (X-ray and IR) and in solution (ES-MS, NMR). Their chiroptical properties were investigated by means of Circular Dichroism and Circularly Polarized Luminescence (for the emitting compounds). Trinuclear and tetranuclear arrays are shown to interconvert in CH3CN, in a process mediated by water. This process was rationalized taking into account the nature of the Ln(III) ions, the initial concentration of the components and the addition or removal of water in solution. The availability of both the enantiomers of the ligand prompted us to study the self-recognition capabilities of the two systems. 1H-NMR and CD studies reveal an almost complete chiral recognition in the self-assembly leading to the trinuclear complex. The process leading to tetranuclear species appears instead perturbed, probably due to the higher number of fundamental components involved (4 metals and 9 ligands instead of 3 metals and 6 ligands). Figure 1: Reaction conditions leading to the synthesis of trinuclear and tetranuclear Ln(III) complexes with ligand (+)-L-. The introduction of a carboxylic moiety onto the 6' posititon of the (-)-5,6- and (-)-4,5- pinene bipyridine lead to the tridentate ligands (-)-HL1 and (-)-HL2, respectively. Mononuclear neutral complexes are obtained upon reaction with Ln(ClO4)3. Different extents of diastereoselectivity are pointed out in the two systems by X-ray analysis and CD spectroscopy. In particular the ligand (-)-HL1, in which the pinene moiety is next to the binding site, seems to be more effective in predetermining the configuration at the metal centre. A low diastereoselectivity is instead expressed in the reactions with (-)-HL2 as revealed by the X-ray structure of [Pr{(-)-L2}3] (both Δ and Λ isomers detected) and by the CD spectrum void of signal.

EPFL2006

Enantiopure helical (supra)molecular arrays containing lanthanides

Marco Antonio Lama

EPFL2006

Self-assembly of organometallic macrocycles and cages

Thomas Brasey

EPFL2006

Low-dimensional supramolecular architectures at metal surfaces

Sebastian Stepanow

EPFL2005