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Development of an interactive genome browser to visualize and analyse large scale genomic data

Publications associées (80)

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Data and scripts for the RaFSIP scheme

Athanasios Nenes, Paraskevi Georgakaki

This repository contains microphysics routines, scripts, and processed data from the Weather Research and Forecasting (WRF) model simulations presented in the paper "RaFSIP: Parameterizing ice multiplication in models using a machine learning approach", by ...

Zenodo2024

Robust machine learning for neuroscientific inference

Steffen Schneider

Modern neuroscience research is generating increasingly large datasets, from recording thousands of neurons over long timescales to behavioral recordings of animals spanning weeks, months, or even years. Despite a great variety in recording setups and expe ...

EPFL2024

Validating functional redundancy with mixed generative adversarial networks

Thanh Trung Huynh, Quoc Viet Hung Nguyen, Thành Tâm Nguyên, Trung-Dung Hoang

Data redundancy has been one of the most important problems in data-intensive applications such as data mining and machine learning. Removing data redundancy brings many benefits in efficient data updating, effective data storage, and error-free query proc ...

ELSEVIER2023

Open and practical exchange, dissemination, and reuse of specimens and data have become a fundamental requirement for life sciences research. The quality of the data obtained and thus the findings and knowledge derived is thus significantly influenced by t ...

WILEY2023

A Framework for Autonomic Computing for In Situ Imageomics

Nina Marion Aurélia Van Tiel

In situ imageomics is a new approach to study ecological, biological and evolutionary systems wherein large image and video data sets are captured in the wild and machine learning methods are used to infer biological traits of individual organisms, animal ...

The Institute of Electrical and Electronics Engineers, Inc2023

KRAB zinc-finger proteins and their transposable element targets: between antagonism and cooperation

Jonas Caspar De Tribolet-Hardy

There are 377 Krüppel-associated box (KRAB) domain-containing zinc finger proteins (KZFPs) in the human genome, making them the largest family of transcription factors. KZFPs are defined by a N-terminal KRAB domain and several zinc-finger domains arranged ...

EPFL2022

How to Orient Oneself in Thinking in the Digital Era: A mixed-methods ethnography of researchers' navigational practices on Gallica

Simon François Dumas Primbault

The birth and development of digital libraries—broadly understood as curated collections of electronic documents accessible online on dedicated platforms with tools for search and consultation—have radically transformed research activities. Consequently, t ...

2022

Peer-Prediction in the Presence of Outcome Dependent Lying Incentives

Boi Faltings, Naman Goel, Aris Filos Ratsikas

We derive conditions under which a peer-consistency mechanism can be used to elicit truthful data from non-trusted rational agents when an aggregate statistic of the collected data affects the amount of their incentives to lie. Furthermore, we discuss the ...

2022

Crypt4GH: a file format standard enabling native access to encrypted data

Juan Ramón Troncoso-Pastoriza

Motivation: The majority of genome analysis tools and pipelines require data to be decrypted for access. This potentially leaves sensitive genetic data exposed, either because the unencrypted data is not removed after analysis, or because the data leaves t ...

OXFORD UNIV PRESS2021

Trajectory inference methods have emerged as a novel class of single-cell bioinformatics tools to study cellular dynamics at unprecedented resolution. Initial development focused on adapting methods based on clustering or graph traversal, but recent advanc ...

ELSEVIER2021