Can microbial growth yield be estimated using simple thermodynamic analogies to technical processes?

In view of the prime importance of the biomass yield in microbial growth for research, for environmental and for industrial applications some thermodynamic concepts are reviewed that were developed over the years in order to understand the large variations observed in this parameter and to predict it. Special emphasis is given to a comparison between cellular growth and an energy transducer, which uses an input of chemical or mechanical energy to drive a useful output reaction. It turns out that it is impossible to calculate energetic efficiencies and to predict biomass yield based on correlations of the latter because the very concept is plagued with internal inconsistencies. Nevertheless, the energy transducer model reflects at least qualitatively the compromise between two extreme types of metabolism that must have emerged during evolution. On one hand, one can imagine that microbial metabolism could dissipate most of the Gibbs energy contained in the substrates for generating large driving forces and thus fast metabolism, but this would result in small biomass yields. On the other hand, metabolism could maximize biomass yield but this would minimize the chemical driving forces and thus the growth rate. It appears that a certain range of values of Gibbs energy dissipation somewhere between these two extremes may have emerged during evolution. Correlations for estimating this range of Gibbs energy dissipation for specific microbial growth system have been developed. Based on a Gibbs energy balance, the wide variety of growth yields occurring in nature may be explained and roughly predicted. (C) 2007 Elsevier B.V. All rights reserved.

Investigation of network flexibility and identification of reaction essentiality of human host cells infected by S. flexneri

Anirikh Chakrabarti, Vassily Hatzimanikatis, Ljubisa Miskovic, Keng Cher Soh

We have developed a consistently reduced core model for HeLa based on the genome scale human reconstruction. This reduced model includes the central carbon pathways, the electron transport chains, all the necessary transport and exchange reactions and the essential compartments for HeLa. In addition, the pyruvate/glutamate metabolism and the purine/pyrimidine catabolism for HeLa were incorporated based on available experimental observations. The core HeLa model consists of 273 reactions and 202 metabolites. The tFBA analysis of the resulting model, where we integrated experimental information about the metabolites concentrations and fluxes, allowed us to: (i) identify the thermodynamically feasible direction profiles of the system; (ii) classify the reactions according to how close (or far) they operate from their thermodynamic equilibrium. This analysis also shed light on the flexibility of the network in terms of the feasible ranges of the metabolite levels and Gibbs energies of reactions. Furthermore, we used the ORACLE (Optimization and Risk Analysis of Complex Living Entities) framework to develop sets of mechanistic kinetics models. ORACLE allows us, despite incomplete information about kinetic properties of the network, to integrate thermodynamics, and available omics and kinetic data. Using these models, we identified and ranked the metabolites according to their impact on the HeLa physiology when drained from the system. This analysis allowed us to uncover the ‘weak’ and ‘strong’ links in host-pathogen interactions. The identification of such links of the metabolic interface between host and pathogen networks could potentially be validated in vitro and can help us understand the mechanisms of infection and provide insights in the fight against intracellular pathogens.

2013

Développement de réacteurs microstructurés pour la conversion du propane en produits valorisés

Olivier Wolfrath

Industry requires continuously new chemical processes to convert raw materials to valuable products limiting the formation of by-products. Since a few years, an increasing interest has been given to the intensification of chemical processes. This represents a new approach in chemical reaction engineering and calls for a new type of chemical reactors: the microstructured reactors. They are characterized by miniature structures whose components have a sub-millimeter size. The flow channels, for example, have a diameter from ten to several hundred microns. The distinctive feature of these structures is a very large surface/volume ratio, namely between 10'000 and 50'000 m2/m3. In these conditions, heat transfer coefficient is very high, up to 25 kW · m-2 · K-1. It is accepted that the residence time distribution in a reactor strongly influences the product selectivity and yield. In these thin channels, the RTD is particularly narrow due to a short radial diffusion time (ms), allowing a precise control of the residence time. Another advantage of these microstructures is an increase of the inherent safety due to a small amount of the compounds used. However, fabrication of microreactors, especially the introduction of active catalyst in microchannels remains a difficult operation. And integration of microsystems in conventional chemical processes is still a challenge. The aim of this work is first to develop a novel membrane reactor based on a new microstructured catalytic packing in the filamentous form and to apply it to the nonoxydative dehydrogenation of propane. A second objective is to develop a reactor with micro heat exchangers allowing an optimized control of homogeneous reactions. This reactor was tested with the partial oxidation of propene to propylene oxide. The microstructured catalyst above is made of thin and long catalytic filaments placed in parallel with a tubular reactor. This new kind of catalyst is based on silica fibres covered by a γ-alumina layer. The position in parallel of these filaments of 7 μm diameter forces the gases to flow in the fibres direction between the filaments. The hydraulic diameter is about 70 μm. Due to this laminar and regular flow, the pressure drop in the bed was divided by 5 compared to a conventional bed (100-160 μm spheres) and the residence time distribution was particularly narrower. Such novel packing brings new opportunities to the heterogeneous catalysis domain because it can be used for many other reactions improving highly the hydrodynamics and keeping an excellent contact with the reactants. The microstructured catalyst was installed in two concentric zones of a tubular reactor separated by a palladium-silver membrane permeable to hydrogen. This product was removed from the gas phase to shift the thermodynamic equilibrium, enhancing the propane conversion from 22% up to 30%. Another significant advantage in this reactor is the increase of propene selectivity up to 97% in comparison to conventional industrial processes reaching 80-90%. This difference is due to the diminution of hydrogenolysis and hydroisomerization reactions. The dehydrogenation is known to be endothermic. Oxidation of the hydrogen passing through the membrane produced heat for this reaction along the catalytic zone. Moreover, a periodic regeneration by air allowed recovering the activity of the catalyst deactivated by coke formed during dehydrogenation. Periodic reaction operations allowed producing continuously propene with a high selectivity, and regenerating simultaneously the catalyst. The second microstructured reactor was developed integrating two micro heat exchangers at the inlet and outlet of a macroscopic tube. The aim is to heat up very fast the gas and to cool it down as well. Without these exchangers, heating and cooling duration corresponded each to about 20% of the total residence time. The use of the microstructures allowed diminishing significantly these durations (4-5% each). Applied to partial oxidation of propene, this reactor reached a more precise control of reaction temperature and duration. The propylene oxide (PO) selectivity was not increased with this system but, due to the microstructures, it was possible to work at higher temperatures where the reaction becomes very fast, without reaching an oxygen conversion of 100%. Indeed, it is essential to avoid this situation where oligomers and coke form dividing by 2 the PO selectivity. So another new kind of reactor was developed suitable for any fast exothermic reaction whose progression has to be limited because of potential consecutive reactions reducing, for example, the selectivity of an intermediate desired compound.

EPFL2001

Production d'hydrogène dans un réacteur microstructuré

Pierre Reuse

The aim of this work was to operate the steam reforming of methanol and the total oxidation of methanol in a microstructured two-passage reactor. The steam reforming enables the production of hydrogen at relatively low temperatures (250 °C) with only a small amount of carbon monoxide (~ 1%). After a cleaning step (CO preferential oxidation, for example), this hydrogen would be a good feed for a fuel cell to produce electricity for mobile applications. Steam reforming is an endothermic reaction. The energy needed to run this reaction is produced by the total oxidation, a strongly exothermic reaction. To allow an efficient heat transfer between these two reactions, a microstructured reactor was used. These structures, with dimensions in the micron range, are widely known to have far better heat transfer capacity than traditional heat exchangers. Furthermore, these structures have some unique features with respect to classical reactors. A narrow residence time distribution, close to that of a plug flow reactor, can be obtained, keeping selectivity high for complex reactions. Microstructured reactors also have small residence time, allowing very quick variations in the feed and experimental conditions. In chapter 4, the concepts relating to the channel coatings will be presented. A Cu/Zn/Al catalyst provided by Süd-Chemie was transformed into a suspension of nanoparticles in isopropanol by using an attrition grinding apparatus. A thin layer (~5 µm) of catalyst was formed on the microchannel walls. Several tests were performed to characterize the adhesion of this layer. The influence of the layer on the residence time distribution was also investigated; it was possible to maintain Bodenstein numbers as high as 50. Chapter 5 is focused on the steam reforming of methanol, the reaction that generates hydrogen. A kinetic analysis in differential and integral modes established that the rate of the reaction is inhibited by hydrogen, the main product of the reaction; the partial order is - 0.2. The influence of water on the rate of reaction is negligible (partial order of 0.1), and methanol has a positive partial order of 0.7. A kinetic constant of 5.57 · 10-6 mol0.4 · (m3)0.6 · gcat-1 · s-1 at 200 °C and an activation energy of 73.9 kJ · mol-1 complete the description of the kinetics of the steam reforming. Throughout the comparisons, we showed that the catalyst coated in the microchannels has an initial rate for the steam reforming 30% higher than the original catalyst in fixed bed. We can therefore conclude that the catalyst modification procedure does not diminish the catalyst activity. This was also shown by comparing our results with results available in the scientific literature for similar catalysts. CO2 selectivity remains high and constant then decreases as 90% conversion is approached. Working with an excess of water with respect to methanol contributes to keeping the selectivity high. A molar ratio of 1.2 is a good compromise between selectivity and increased energy costs due to the vaporization of the additional water. It's also beneficial to work at conversions below 90% to be in the high selectivity domain and to diminish the inhibiting influence of hydrogen. Finally, we showed that this catalyst deactivates over 100 hours at a temperature of 300 °C. A kinetic model for the deactivation at temperatures between 300 °C and 330 °C was established. In chapter 6 the total oxidation of methanol was studied. A cobalt based catalyst was developed to allow the synchronization of the two reactions temperatures. The minimum temperature for complete conversion for the total oxidation reaction must clearly not exceed an acceptable working temperature for the steam reforming catalyst (i.e. a temperature that results in an acceptable catalyst lifetime). A kinetic analysis determined partial orders for methanol and oxygen as 0.67, the kinetic constant at 230 °C as 5.45 · 10-3 mmol-0.33 · m4 · (gcat · s)-1 and the activation energy as 130 kJ · mol-1. The copper based catalyst used for the steam reforming of methanol was also active for the total oxidation of methanol. Unfortunately the minimal temperature to ensure a total conversion was not compatible with the working temperature of the steam reforming. In chapter 7, the results concerning the coupling of the two previously studied reactions are presented. The numerous fittings and cables necessary for the operation of the reactor didn't allow the reactor to be run in an autothermal mode. Therefore constant, not regulated, heating was used to compensate the thermal losses. By coupling the two reactions and by studying the dynamic response time of the reactor (temperature and conversion of the steam reforming reaction) at the time of stopping and starting the oxidation reaction, we've seen that the temperature increase was around +10 °C within 60 seconds and that the conversion for the steam reforming of the methanol fitted well with the temperature increase. This reactor also has good dynamics and responds quickly to feed variations. When the coupling mode was changed from co-current to counter-current we noticed a significant increase in conversion. Furthermore, selectivity in counter-current mode remained high, even for conversion approaching 100%.

EPFL2003