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Updating and curating metabolic pathways of TB

Publications associées (43)

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Models capturing latent constructs

Michel Bierlaire, Aurélie Glerum

In the context of the development of hybrid choice models (HCM), we are interested in understanding better how to design models which can account for the latent information contained in new data types (psychometrics, data from smartphones, etc.) for which ...

2011

On Decision Procedures for Algebraic Data Types with Abstractions

Viktor Kuncak, Philippe Paul Henri Suter, Mirco Dotta

We describe a parameterized decision procedure that extends the decision procedure for functional recursive algebraic data types (trees) with the ability to specify and reason about abstractions of data structures. The abstract values are specified using r ...

2009

Supporting Dimensional Analysis in SystemC-AMS

Alain Vachoux

This paper will introduce new modeling capabilities for SystemC-AMS to describe energy conserving multi-domain systems in a formal and consistent way at a high level of abstraction. To this end, all variables and parameters of the system model need to be a ...

Ieee Service Center, 445 Hoes Lane, Po Box 1331, Piscataway, Nj 08855-1331 Usa2009

Supporting Dimensional Analysis in SystemC-AMS

Alain Vachoux

IEEE2009

Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis

Stewart Cole

Mycobacterium marinum, a ubiquitous pathogen of fish and amphibia, is a near relative of Mycobacterium tuberculosis, the etiologic agent of tuberculosis in humans. The genome of the M strain of M. marinum comprises a 6,636,827-bp circular chromosome with 5 ...

2008

O6-alkylguanine-DNA alkyltransferase as a new tool for functional proteomics

Anke Arnold

Recently the sequencing project of the human genome has been completed. The interest of the post-sequencing-era is shifting nowadays towards the investigation of the biological function and localization of the encoded proteins. Proteins are essential parts ...

EPFL2007

Indexing strategies for rapid searches of short words in genome sequences

Giovanna Ambrosini, Philipp Bucher

Searching for matches between large collections of short (14-30 nucleotides) words and sequence databases comprising full genomes or transcriptomes is a common task in biological sequence analysis. We investigated the performance of simple indexing strateg ...

Public Library of Science2007

Circuits and Systems for High-Throughput Biology

Giovanni De Micheli, Luca Benini

The beginning of this millennium has been marked by some remarkable scientific events, notably the completion of the first objective of the Human Genome Project [HGP], i.e., the decoding of the 3 billion bases that compose the human genome. This success ha ...

2006

Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila

Bruno Lemaitre

Pseudomonas entomophila is an entomopathogenic bacterium that, upon ingestion, kills Drosophila melanogaster as well as insects from different orders. The complete sequence of the 5.9-Mb genome was determined and compared to the sequenced genomes of four P ...

Nature Publishing Group2006

The European dimension for the mouse genome mutagenesis program

Johan Auwerx, Denis Duboule, Walter Wahli

The European Mouse Mutagenesis Consortium is the European initiative contributing to the international effort on functional annotation of the mouse genome. Its objectives are to establish and integrate mutagenesis platforms, gene expression resources, phen ...

2004