Publication

Dendrite Tracking in Microscopic Images using Minimum Spanning Trees and Localized E-M

Publications associées (32)

Stabilization of overlapping biofilaments by passive crosslinkers

The formation, maintenance and reorganization of the cytoskeletal filament network is essential for a number of cellular processes. While the crucial role played by active forces generated by motor proteins has been studied extensively, only recently the i ...

2018

Learning to See through Reflections

Sabine Süsstrunk

"Pictures of objects behind a glass are difficult to interpret" "and understand due to the superposition of two real images: a reflection layer and a background layer. Separation of these two layers is challenging due to the ambiguities in as- signing text ...

IEEE2018

Semi-automatic 3D morphological reconstruction of neurons with densely branching morphology: Application to retinal All amacrine cells imaged with multi -photon excitation microscopy

Bas-Jan Zandt

Background: Accurate reconstruction of the morphology of single neurons is important for morphometric studies and for developing compartmental models. However, manual morphological reconstruction can be extremely time-consuming and error-prone and algorith ...

Elsevier2017

A Robust Actin Filaments Image Analysis Framework

Giovanni Dietler, Sandor Kasas

The cytoskeleton is a highly dynamical protein network that plays a central role in numerous cellular physiological processes, and is traditionally divided into three components according to its chemical composition, i.e. actin, tubulin and intermediate fi ...

Public Library of Science2016

NeuroMorph: A Toolset for the Morphometric Analysis and Visualization of 3D Models Derived from Electron Microscopy Image Stacks

Pascal Fua, Graham Knott, Corrado Cali, Biagio Nigro, Anne Alison Jorstad, Marta Wawrzyniak

Serial electron microscopy imaging is crucial for exploring the structure of cells and tissues. The development of block face scanning electron microscopy methods and their ability to capture large image stacks, some with near isotropic voxels, is proving ...

Humana Press2015

Enforcing Efficient Equilibria in Network Design Games via Subsidies

Christos Kalaitzis

The efficient design of networks has been an important engineering task that involves challenging combinatorial optimization problems. Typically, a network designer has to select among several alternatives which links to establish so that the resulting net ...

Springer Verlag2015

Image processing on reconfigurable hardware for continuous monitoring of fluorescent biomarkers in cell cultures

Julien Michel Ghaye

Fluorescence microscopy is a widespread tool in biological research. It is the primary modality for bioimaging and empowers the study and analysis of multitudes of biological processes. It can be applied to fixed biosamples, that is samples with frozen bio ...

EPFL2015

Right-Protected Data Publishing with Provable Distance-Based Mining

Michail Vlachos, Nikolaos Freris

Protection of one's intellectual property is a topic with important technological and legal facets. We provide mechanisms for establishing the ownership of a dataset consisting of multiple objects. The algorithms also preserve important properties of the d ...

Ieee Computer Soc2014

Dendritic tree extraction from noisy maximum intensity projection images in C-elegans

Pascal Fua, Raphael Sznitman, Josué Sznitman

Background: Maximum Intensity Projections (MIP) of neuronal dendritic trees obtained from confocal microscopy are frequently used to study the relationship between tree morphology and mechanosensory function in the model organism C. elegans. Extracting den ...

Biomed Central Ltd2014

Ultra-soft cantilevers and 3-D micro-patterned substrates for contractile bundle tension measurement in living cells

Jean-Jacques Meister, Niccolo Piacentini, Chiara Gabella, Benoît Vianay

Actin-myosin microfilament bundles or stress-fibers are the principal tension-generating structures in the cell. Their mechanical properties are critical for cell shape, motion, and interaction with other cells and extracellular matrix, but were so far dif ...

Royal Society of Chemistry2014

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