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Call for Papers: Special Issue on System Identification for Biological Systems

Publications associées (75)

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Parameterization of the LHCb Magnetic Field Map

Anne Keune

A parameterization of the LHCb magnetic field is presented. It is derived from an analysis data from a high-precision survey in and around the 4 Tm dipole magnet. By optimally using both data measurements and simulation values, a precision of less than 10( ...

2009

Graphical display for annual climate-based daylight simulation

Marilyne Andersen, Magali Bodart

Due to daylight variability, a design cannot be thoroughly assessed using single-moment simulations, which is why we need dynamic performance metrics like Daylight Autonomy and Useful Daylight Illuminance. Going one step further, the annual variation in pe ...

2008

Normalisation of Histogrammed List Mode Data

Many PET scanners nowadays have the possibility to record event-by-event information, known as list mode data. This has the advantage of keeping the data in the highest possible resolution (both temporal and spatial). In most cases, list mode data are then ...

2008

Spectral coarse graining and synchronization in oscillator networks

Paolo De Los Rios, David Gfeller

Coarse graining techniques offer a promising alternative to large-scale simulations of complex dynamical systems, as long as the coarse-grained system is truly representative of the initial one. Here, we investigate how the dynamical properties of oscillat ...

American Physical Society2008

Hybrid identification methods for the reconstruction of genetic regulatory networks

Giancarlo Ferrari Trecate

This tutorial paper considers the problem of reconstructing Genetic Regulatory Networks (GRNs) from gene expression measurements. Among various modeling frameworks that have been proposed for these biological systems, we focus on PieceWise Affine (PWA) mod ...

2007

Comment on 'Critical behaviour in the relaminarization of localized turbulence in pipe flow'

Tobias Schneider, Jerry Westerweel

This is a comment on arXiv:physics/0608292, subsequently published in Phys Rev Lett, 98, 014501 (2007), in which Willis and Kerswell study in direct numerical simulations the statistics of turbulent lifetimes in pipe flow. They suggest that their data for ...

2007

Dynamic simulation of regulatory networks using SQUAD

Giovanni De Micheli, Abhishek Garg, Ioannis Xenarios

Background The ambition of most molecular biologists is the understanding of the intricate network of molecular interactions that control biological systems. As scientists uncover the components and the connectivity of these networks, it becomes possible t ...

2007

Circuits and Systems for High-Throughput Biology

Giovanni De Micheli, Luca Benini

The beginning of this millennium has been marked by some remarkable scientific events, notably the completion of the first objective of the Human Genome Project [HGP], i.e., the decoding of the 3 billion bases that compose the human genome. This success ha ...

2006

Analysis and numerical simulation of viscoelastic flows

Andrea Bonito

Mathematical and numerical aspects of viscoelastic flows are investigated here. Two simplified mathematical models are considered. They are motivated by a splitting algorithm for solving viscoelastic flows with free surfaces. The first model is a simplifie ...

EPFL2006

Theoretical treatment and computer simulation of microelectrode arrays

Nico de Rooij

New relations for and interrelations between the current responses of different microelectrode arrays are presented. Interdigitated microelectrode arrays (IDAs: alternating cathodes and anodes) and uniform microband electrode arrays (MEAs: only cathodes or ...

2006