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Bacterial biofilm under flow: First a physical struggle to stay, then a matter of breathing

Publications associées (38)

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Microbiology and biophysics are converging to advance our understanding of the mechanobiology of microorganisms. In this Review, Dufrene and Persat discuss the physical forces that bacteria experience in their natural environments and the structures that t ...

NATURE PUBLISHING GROUP2020

Understanding fluid flow in rough fractures is of high importance to large scale geologic processes and to most anthropogenic geo-energy activities. Here, we conducted fluid transport experiments on Carrara marble fractures with a novel customized surface ...

2020

Transmissivity of rock fractures: Normal loading and shear reactivation

Monia Woehner

Enhanced Geothermal Systems represent a major field of study in the context of renewable energy resources. To create extractable energy from those reservoirs, a high enough fluid flow rate for production needs to be achieved. This fluid flow rate is direct ...

2020

Effective stress jump across membranes

François Gallaire, Giuseppe Antonio Zampogna

A macroscopic condition to simulate the interaction between an incompressible fluid flow and a permeable micro-structured rigid surface (i.e. a thin membrane) has been developed using multiscale homogenization and matching asymptotic expansions between the ...

CAMBRIDGE UNIV PRESS2020

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During chronic infections and in microbiota, bacteria predominantly colonize their hosts as multicellular structures called biofilms. A common assumption is that biofilms exclusively interact with their hosts biochemically. However, the contributions of me ...

2020

Cellular advective-diffusion drives the emergence of bacterial surface colonization patterns and heterogeneity

Alexandre Louis André Persat, Tamara Rossy

Microorganisms navigate and divide on surfaces to form multicellular structures called biofilms, the most widespread survival strategy found in the bacterial world. One common assumption is that cellular components guide the spatial architecture and arrang ...

2019

Automated 3D Optical Coherence Tomography to Elucidate Biofilm Morphogenesis Over Large Spatial Scales

Tom Ian Battin, Hannes Markus Peter, Anna Depetris, Antoine Wiedmer

Biofilms are a most successful microbial lifestyle and prevail in a multitude of environmental and engineered settings. Understanding biofilm morphogenesis, that is the structural diversification of biofilms during community assembly, represents a remarkab ...

2019

Fluid dynamics of flow fields in a disposable 600-mL orbitally shaken bioreactor

Florian Maria Wurm, David Hacker, Dominique Terry Monteil Jr, Likuan Zhu

Orbitally shaken bioreactors (OSRs) are commonly used for the cultivation of mammalian cells in suspension. Here we conducted a three-dimensional computational fluid dynamics (CFD) simulation to characterize the fluid field in the disposable 600-mL orbital ...

Elsevier2018

Multiscale model reduction methods for flow in heterogeneous porous media

Assyr Abdulle, Ondrej Budác

In this paper we provide a general framework for model reduction methods applied to fluid flow in porous media. Using reduced basis and numerical homogenization techniques we show that the complexity of the numerical approximation of Stokes flow in heterog ...

Springer2016

MATHICSE Technical Report : Multiscale model reduction methods for flow in heterogeneous porous media

Assyr Abdulle, Ondrej Budác

MATHICSE2016