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From local resynchronization to global pattern recovery in the zebrafish segmentation clock

Publications associées (34)

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Generation of dispersed presomitic mesoderm cell cultures for imaging of the zebrafish segmentation clock in single cells

Andrew Charles Oates, Daniele Soroldoni

Segmentation is a periodic and sequential morphogenetic process in vertebrates. This rhythmic formation of blocks of tissue called somites along the body axis is evidence of a genetic oscillator patterning the developing embryo. In zebrafish, the intracell ...

2014

A doppler effect in embryonic pattern formation

Andrew Charles Oates, Daniele Soroldoni

During embryonic development, temporal and spatial cues are coordinated to generate a segmented body axis. In sequentially segmenting animals, the rhythm of segmentation is reported to be controlled by the time scale of genetic oscillations that periodical ...

2014

Collective modes of coupled phase oscillators with delayed coupling

Andrew Charles Oates

We study the effects of delayed coupling on timing and pattern formation in spatially extended systems of dynamic oscillators. Starting from a discrete lattice of coupled oscillators, we derive a generic continuum theory for collective modes of long wavele ...

2012

Morphology-driven automatic segmentation of MR images of the neonatal brain

Michel Kocher, Laura Ioana Gui, François Lazeyras, Radoslaw Lisowski

The segmentation of MR images of the neonatal brain is an essential step in the study and evaluation of infant brain development. State-of-the-art methods for adult brain MRI segmentation are not applicable to the neonatal brain, due to large differences i ...

Elsevier Science Bv2012

Intercellular coupling regulates the period of the segmentation clock

Andrew Charles Oates

Background: Coupled biological oscillators can tick with the same period. How this collective period is established is a key question in understanding biological clocks. We explore this question in the segmentation clock, a population of coupled cellular o ...

2010

Biomechanics of Vascular Wall

Rana Saitta-Rezakhaniha

This thesis contributes to the field of biomechanics of vascular wall. The focus is particularly on the microstructure of vascular elastin and collagen constituents and their contribution to the macroscopic mechanical behavior of the wall. The analysis is ...

EPFL2010

Parametric Resonance in Time-Dependent Networks of Hopf Oscillators

Max-Olivier Hongler, Julio Rodriguez

We study a collection of limit cycle oscillators with different frequencies interacting via networks. With static networks, our specific class of models produces a frequency learning mechanism leading the collection of oscillators to ultimately adopt a sin ...

2010

Biosensor microprobe arrays for in vivo monitoring of neurotransmitters

Olivier Frey

Real-time monitoring of neurotransmitters is of utmost importance for understanding the functioning of the brain. Especially L-glutamate and choline play a major role in chemical signalling and are highly involved in cognitive functions such as learning, m ...

EPFL2010

Geodesic Patterns

Bailin Deng

Geodesic curves in surfaces are not only minimizers of distance, but they are also the curves of zero geodesic (sideways) curvature. It turns out that this property makes patterns of geodesics the basic geometric entity when dealing with the cladding of a ...

Association for Computing Machinery2010

Delayed coupling theory of vertebrate segmentation

Andrew Charles Oates

Rhythmic and sequential subdivision of the elongating vertebrate embryonic body axis into morphological somites is controlled by an oscillating multicellular genetic network termed the segmentation clock. This clock operates in the presomitic mesoderm (PSM ...

2009