Optimised biomolecular extraction for metagenomic analysis of microbial biofilms from high-mountain streams

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Reduction of riverbed clogging related to sediment flushing

Giovanni De Cesare, Romain Maxime Dubuis

The ecological effects of dams on sediment and river flow have been subject to an increasing attention, leading to the implementation of mitigation measures such as environmental flow release and sediment replenishment. However, fine sediment dynamics have ...

CRC Press/Balkema2023

Clogging of riverbed substrates by fine sediment

Romain Maxime Dubuis

Riverbeds represent the habitat of numerous aquatic species. Exchanges between the groundwater, the hyporheic zone and the surface flow are also essential for river ecosystems. Fine sediment transported by rivers deposits inside or on top of the bed and mo ...

EPFL2023

Experimental characterization of root-reinforced riparian sediment deposits in a restored and widened river course

Giovanni De Cesare, Paolo Perona

The Arbogne River is located mainly in the Swiss canton of Fribourg. The River was meandering through the plane at a very low gradient and several exceptional historic floods with large sediment accumulation are mentioned. After important river training wo ...

2023

Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics

Hamed Khakzad

Author summaryIn recent years, the application of deep learning represented a breakthrough in the mass spectrometry (MS) field by improving the assignment of the correct sequence of amino acids from observable MS spectra without prior knowledge, also known ...

PUBLIC LIBRARY SCIENCE2023

Modeling, analysis, and design of complex biological networks

Mohammadomid Oftadeh

Automating experimental procedures has resulted in an unprecedented increase in the volume of generated data, which, in turn, has caused an accumulation of unprocessed data. As a result, the need to develop tools to analyze data systematically has been ris ...

EPFL2023

Ecosystem engineering by periphyton in Alpine proglacial streams

Tom Ian Battin, Davide Mancini, Marc Aguet, Adrijan Selitaj, Matteo Roncoroni

Stream periphytons are candidate ecosystem engineers in proglacial margins. Here, we quantify the extent to which they are engineers for the case of hillslope-fed tributaries in the terrace zones of proglacial margin alluvial plains. Candidate ecosystem en ...

WILEY2023

Ultrasonic sediment flux profiling with ACVP Technology: application to sediment-laden Boundary Layer flows

Giovanni De Cesare, David Hurther

Sediment transport in geophysical boundary layer flows has relevance to a broad spectrum of sciences ranging from the physical and chemical, to the biological, ecological and geological. Advances in sediment transport modelling and prediction strongly suff ...

2023

A field-capable rapid plant DNA extraction protocol using microneedle patches for botanical surveying and monitoring

Sebastian Maerkl, Jonathan Selz, Nicolas Rémi Adam

PremiseA novel protocol for rapid plant DNA extraction using microneedles is proposed, which supports botanic surveys, taxonomy, and systematics. This protocol can be conducted in the field with limited laboratory skills and equipment. The protocol is vali ...

WILEY2023

Construction of sequencing libraries from a ribonucleic acid (rna) using tailing and ligation of cdna (tlc)

Didier Trono, Christina Ernst

The present invention provides a method for preparing a sequencing library from a ribonucleic acid (RNA) sample. ...

2023

Iron Reduction in Profundal Sediments of Ultraoligotrophic Lake Tahoe under Oxygen-Limited Conditions

Meret Aeppli

Increased periods of bottom water anoxia in deep temperate lakes due to decreasing frequency and depth of water column mixing in a warming climate may result in the reductive dissolution of iron minerals and increased flux of nutrients from the sediment in ...

2023

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2023